C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000TU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000033175-ENSDARG00000030297 CGP 7955 11:38886328-38994099
GeneTranscriptPositionBiotype
ENSDARG00000030297 (AL929022.1)
Uncharacterized protein 		ENSDART00000019047 (AL929022.1-201) 38969549-38994099 protein_coding
ENSDARG00000033175 (snrpe)
small nuclear ribonucleoprotein polypeptide E 		ENSDART00000050296 (snrpe-001) 38886328-38891977 protein_coding
CIL_0000TU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000182004-ENSG00000143842 CGP 9606 1:203861603-204127743
GeneTranscriptPositionBiotype
ENSG00000143842 (SOX13)
SRY (sex determining region Y)-box 13 		ENST00000272193 (SOX13-004) 204116065-204126152 processed_transcript
ENST00000367203 (SOX13-001) 204073115-204119859 processed_transcript
ENST00000367204 (SOX13-002) 204073604-204127743 protein_coding
ENST00000480326 (SOX13-003) 204116507-204122917 nonsense_mediated_decay
ENST00000525258 (SOX13-009) 204122386-204123729 retained_intron
ENST00000525442 (SOX13-007) 204074026-204113088 protein_coding
ENST00000528591 (SOX13-008) 204078129-204116627 protein_coding
ENST00000530882 (SOX13-006) 204073156-204117158 processed_transcript
ENST00000534185 (SOX13-005) 204073153-204114570 processed_transcript
ENST00000618875 (SOX13-201) 204112916-204127741 protein_coding
ENSG00000176754 (LINC00303)
long intergenic non-protein coding RNA 303 		ENST00000367207 (LINC00303-001) 204032447-204041265 lincRNA
ENST00000418245 (LINC00303-002) 204032934-204041264 lincRNA
ENST00000427799 (LINC00303-003) 204032934-204041265 lincRNA
ENSG00000182004 (SNRPE)
small nuclear ribonucleoprotein polypeptide E 		ENST00000367208 (SNRPE-004) 203863625-203870051 protein_coding
ENST00000414487 (SNRPE-001) 203861615-203870550 protein_coding
ENST00000469451 (SNRPE-003) 203861850-203865119 processed_transcript
ENST00000470492 (SNRPE-006) 203861609-203870077 processed_transcript
ENST00000475035 (SNRPE-005) 203861603-203870084 processed_transcript
ENST00000483099 (SNRPE-002) 203861603-203870081 processed_transcript
ENSG00000232917 (HSPE1P6)
heat shock 10kDa protein 1 pseudogene 6 		ENST00000479457 (HSPE1P6-001) 203903723-203904013 processed_pseudogene
ENSG00000236430 (KRT8P29)
keratin 8 pseudogene 29 		ENST00000420409 (KRT8P29-001) 203872574-203874187 processed_pseudogene
ENSG00000237379 (CBX1P3)
chromobox homolog 1 pseudogene 3 		ENST00000413296 (CBX1P3-001) 203954640-203955780 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TU_0001ENSDARG00000030297ENSDART00000019047ENSDARG00000033175ENSDART00000050296CIL_0000TU_0002ENSG00000143842ENST00000272193ENST00000367203ENST00000367204ENST00000480326ENST00000525258ENST00000525442ENST00000528591ENST00000530882ENST00000534185ENST00000618875ENSG00000176754ENST00000367207ENST00000418245ENST00000427799ENSG00000182004ENST00000367208ENST00000414487ENST00000469451ENST00000470492ENST00000475035ENST00000483099ENSG00000232917ENST00000479457ENSG00000236430ENST00000420409ENSG00000237379ENST00000413296
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TU_0001ENSDARG00000030297ENSDART00000019047ENSDARG00000033175ENSDART00000050296CIL_0000TU_0002ENSG00000143842ENST00000272193ENST00000367203ENST00000367204ENST00000528591ENST00000618875ENSG00000176754ENST00000367207ENST00000427799ENSG00000182004ENST00000367208ENST00000414487ENST00000470492ENST00000475035ENST00000483099ENSG00000232917ENST00000479457ENSG00000236430ENST00000420409ENSG00000237379ENST00000413296
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000030297 ENSDART00000019047 N/A N/A N/A 2.117±0.00 N/A N/A 0.702±0.00 0.681±0.00 0.221±0.00 N/A 1.246±0.00 N/A N/A N/A
ENSDARG00000033175 ENSDART00000050296 N/A N/A N/A 29.162±15.64 N/A N/A 20.770±17.92 35.445±17.59 3.438±0.00 N/A 12.276±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143842 ENST00000272193 N/A N/A N/A N/A N/A N/A N/A 0.791±0.00 N/A N/A 0.499±0.00 N/A N/A 1.773±0.00
ENST00000367203 N/A N/A 0.665±0.00 0.798±0.00 N/A 0.236±0.00 0.051±0.00 N/A 0.437±0.00 0.453±0.00 N/A 0.932±0.00 N/A N/A
ENST00000367204 8.499±0.00 7.616±0.00 N/A 1.994±1.74 2.088±1.65 4.690±3.48 N/A 6.372±0.00 3.407±1.68 5.310±0.00 3.396±0.00 8.798±0.00 8.128±1.03 5.771±0.00
ENST00000480326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528591 N/A N/A N/A N/A N/A N/A 0.877±0.00 1.452±0.00 N/A N/A 1.324±0.00 N/A N/A N/A
ENST00000530882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618875 4.438±0.00 1.836±0.00 N/A 0.396±0.00 4.754±0.00 N/A 3.907±0.00 7.816±0.00 N/A 7.714±6.43 1.195±1.08 10.818±3.26 18.365±8.05 1.106±0.00
ENSG00000176754 ENST00000367207 N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427799 N/A N/A N/A 0.018±0.00 N/A 0.045±0.00 N/A N/A N/A N/A N/A 0.070±0.00 N/A N/A
ENSG00000182004 ENST00000367208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.207±21.52 34.121±5.34 N/A
ENST00000414487 N/A 5.156±0.00 4.077±0.00 11.198±0.00 9.560±0.00 5.385±1.46 3.400±2.10 5.915±0.29 6.778±4.52 4.061±2.28 3.490±2.09 11.835±0.85 12.802±3.13 4.720±0.61
ENST00000469451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470492 31.419±0.00 60.219±0.00 1.876±0.00 10.231±0.00 44.057±0.00 43.872±0.00 N/A N/A N/A N/A 1.726±0.00 N/A N/A 48.783±0.00
ENST00000475035 15.893±0.00 13.134±0.00 N/A 17.882±0.00 10.198±0.00 14.786±0.00 11.282±0.00 24.725±0.00 18.970±0.00 19.192±0.00 11.103±0.00 36.140±12.07 15.215±8.26 17.780±5.16
ENST00000483099 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.554±0.00 N/A N/A N/A N/A
ENSG00000232917 ENST00000479457 N/A 0.130±0.00 N/A N/A N/A 0.116±0.00 0.039±0.00 0.124±0.00 0.038±0.00 0.040±0.00 N/A N/A N/A 0.152±0.08
ENSG00000236430 ENST00000420409 N/A 0.013±0.00 N/A 0.024±0.00 0.066±0.00 N/A 0.011±0.00 N/A N/A N/A N/A N/A 0.034±0.00 0.011±0.00
ENSG00000237379 ENST00000413296 N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.158±0.00

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