C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mesoderm specific transcript
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416162 MEST-003 ENSG00000106484 9606 + 7:130486354-130506292 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyOvaryENST00000416162
Transcript ID Heart Kidney Ovary
ENST00000416162 0.918±0.00 2.475±0.00 3.822±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PP CIL_0008PP_0001 VISTA 7:130073108-130674619
CIL_0006OS CIL_0006OS_0001 CGP 7:130393771-130506296
CIL_000271 CIL_000271_0001 CGP 7:130486171-130668748

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005783 ISS endoplasmic reticulum
GO:0007498 TAS mesoderm development
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016787 IEA hydrolase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163949 Mest-201 protein_coding Mus_musculus 0 795
ENSMUST00000128398 Mest-001 protein_coding Mus_musculus 0 717
ENSMUST00000157040 Mest-002 protein_coding Mus_musculus 0 713
ENSMUST00000124665 Mest-005 protein_coding Mus_musculus 0 712
ENSMUST00000147400 Mest-004 protein_coding Mus_musculus 0 549
ENSMUST00000137521 Mest-009 processed_transcript Mus_musculus 0 518
ENSMUST00000130751 Mest-010 processed_transcript Mus_musculus 0 470
ENSMUST00000149496 Mest-011 retained_intron Mus_musculus 0 366

Loading