C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein geranylgeranyltransferase type I, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000419445 PGGT1B-001 ENSG00000164219 9606 - 5:115210830-115262872 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000419445
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000419445 3.080±0.00 3.896±0.00 1.759±0.91 2.054±0.93 2.243±0.00 1.795±0.05 2.360±0.89 2.591±0.00 0.959±0.08 1.495±0.00 3.398±0.94 2.475±0.14 3.201±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UL CIL_0004UL_0001 CGP 5:115124762-115262872
CIL_0004UK CIL_0004UK_0001 CGP 5:115210830-115296831

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004661 IDA protein geranylgeranyltransferase activity
GO:0004662 ISS CAAX-protein geranylgeranyltransferase activity
GO:0005515 IEA protein binding
GO:0005953 IDA CAAX-protein geranylgeranyltransferase complex
GO:0008144 IEA drug binding
GO:0008270 ISS zinc ion binding
GO:0008284 IEA positive regulation of cell proliferation
GO:0018344 IDA protein geranylgeranylation
GO:0019840 IEA isoprenoid binding
GO:0034097 IEA response to cytokine
GO:0042277 IEA peptide binding
GO:0045787 IEA positive regulation of cell cycle
GO:0051771 IEA negative regulation of nitric-oxide synthase biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025354 Pggt1b-201 protein_coding Mus_musculus 0 1607

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