C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoic acid receptor, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420042 RARA-006 ENSG00000131759 9606 + 17:40351387-40356213 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungOvaryTestisENST00000420042
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Ovary Testis
ENST00000420042 15.140±0.00 12.361±0.00 7.197±0.00 16.747±0.00 15.537±0.00 12.647±0.00 1.877±0.00 2.522±0.00 18.900±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873
CIL_0002GL CIL_0002GL_0001 CGP 17:40287633-40357643
CIL_00050G CIL_00050G_0001 CGP 17:40309192-40363815

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164748 Rara-201 protein_coding Mus_musculus 0 1245
ENSMUST00000107473 Rara-004 protein_coding Mus_musculus 0 1245
ENSMUST00000068133 Rara-001 protein_coding Mus_musculus 0 1245
ENSMUST00000107475 Rara-002 protein_coding Mus_musculus 0 1245
ENSMUST00000107474 Rara-003 protein_coding Mus_musculus 0 1245

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