C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00050G_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000131759-ENSG00000183153 CGP 9606 17:40309192-40363815
GeneTranscriptPositionBiotype
ENSG00000131759 (RARA)
retinoic acid receptor, alpha 		ENST00000254066 (RARA-001) 40309194-40356796 protein_coding
ENST00000394081 (RARA-004) 40342363-40356795 protein_coding
ENST00000394086 (RARA-003) 40341388-40356795 protein_coding
ENST00000394089 (RARA-002) 40318281-40356331 protein_coding
ENST00000420042 (RARA-006) 40351387-40356213 processed_transcript
ENST00000425707 (RARA-007) 40318285-40357643 protein_coding
ENST00000475125 (RARA-005) 40345241-40354409 protein_coding
ENST00000577646 (RARA-008) 40309192-40348336 protein_coding
ENST00000579727 (RARA-010) 40342399-40349818 processed_transcript
ENST00000582914 (RARA-009) 40322991-40331168 processed_transcript
ENST00000617726 (RARA-201) 40342705-40357642 protein_coding
ENSG00000183153 (GJD3)
gap junction protein, delta 3, 31.9kDa 		ENST00000578689 (GJD3-001) 40362931-40363815 protein_coding
ENSG00000265666 (RARA-AS1)
RARA antisense RNA 1 		ENST00000581080 (RARA-AS1-001) 40340867-40343136 antisense
ENSG00000266208 (CTD-2267D19.3)
 ENST00000578774 (CTD-2267D19.3-001) 40360655-40364693 antisense
ENSG00000278918 (CTD-2267D19.1)
 ENST00000623156 (CTD-2267D19.1-001) 40348049-40350539 TEC
CIL_00050G_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037992-ENSMUSG00000047197 CGP 10090 11:98927818-98983016
GeneTranscriptPositionBiotype
ENSMUSG00000037992 (Rara)
retinoic acid receptor, alpha 		ENSMUST00000068133 (Rara-001) 98937718-98974942 protein_coding
ENSMUST00000107473 (Rara-004) 98960412-98974942 protein_coding
ENSMUST00000107474 (Rara-003) 98927818-98974162 protein_coding
ENSMUST00000107475 (Rara-002) 98937698-98974162 protein_coding
ENSMUST00000139399 (Rara-005) 98938328-98950361 processed_transcript
ENSMUST00000147985 (Rara-006) 98939712-98950490 processed_transcript
ENSMUST00000164748 (Rara-201) 98939711-98974942 protein_coding
ENSMUSG00000047197 (Gjd3)
gap junction protein, delta 3 		ENSMUST00000062931 (Gjd3-001) 98982180-98983016 protein_coding
ENSMUSG00000064491 (Gm22061)
predicted gene, 22061 		ENSMUST00000082557 (Gm22061-201) 98946444-98946550 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00050G_0001ENSG00000131759ENST00000254066ENST00000394081ENST00000394086ENST00000394089ENST00000420042ENST00000425707ENST00000475125ENST00000577646ENST00000579727ENST00000582914ENST00000617726ENSG00000183153ENST00000578689ENSG00000265666ENST00000581080ENSG00000266208ENST00000578774ENSG00000278918ENST00000623156CIL_00050G_0002ENSMUSG00000037992ENSMUST00000068133ENSMUST00000107473ENSMUST00000107474ENSMUST00000107475ENSMUST00000139399ENSMUST00000147985ENSMUST00000164748ENSMUSG00000047197ENSMUST00000062931ENSMUSG00000064491ENSMUST00000082557
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00050G_0001ENSG00000131759ENST00000254066ENST00000394081ENST00000394086ENST00000394089ENST00000420042ENST00000425707ENST00000475125ENST00000577646ENST00000579727ENST00000617726ENSG00000183153ENST00000578689ENSG00000265666ENST00000581080ENSG00000266208ENST00000578774ENSG00000278918ENST00000623156CIL_00050G_0002ENSMUSG00000037992ENSMUST00000068133ENSMUST00000107473ENSMUST00000107474ENSMUST00000107475ENSMUST00000164748ENSMUSG00000047197ENSMUST00000062931ENSMUSG00000064491ENSMUST00000082557
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131759 ENST00000254066 N/A N/A 0.860±0.00 2.257±0.00 N/A N/A N/A 1.491±1.13 1.073±0.00 0.580±0.00 7.660±0.00 17.033±11.71 5.971±1.33 N/A
ENST00000394081 9.722±0.00 5.819±0.00 N/A N/A N/A 6.230±0.00 2.259±0.00 0.988±0.00 N/A 23.162±0.00 N/A N/A 3.547±0.26 7.645±0.00
ENST00000394086 N/A N/A N/A N/A N/A N/A N/A N/A 3.585±0.00 15.963±0.00 N/A 11.569±0.00 N/A N/A
ENST00000394089 9.775±0.00 8.075±0.00 N/A N/A 5.703±4.42 7.884±0.00 2.165±0.00 0.436±0.00 0.449±0.00 1.069±0.00 7.934±0.00 15.667±5.70 6.503±1.55 7.772±0.82
ENST00000420042 15.140±0.00 12.361±0.00 N/A 7.197±0.00 16.747±0.00 15.537±0.00 N/A 12.647±0.00 N/A 1.877±0.00 N/A 2.522±0.00 N/A 18.900±0.00
ENST00000425707 N/A 3.882±0.00 N/A 2.150±0.00 N/A N/A 2.165±0.00 3.402±0.00 N/A 10.395±0.00 7.983±0.00 9.713±6.10 N/A N/A
ENST00000475125 N/A N/A 1.614±0.00 0.791±0.00 N/A 0.666±0.00 0.322±0.00 1.543±0.00 N/A 3.458±0.00 N/A 40.718±0.00 21.712±0.00 26.397±0.00
ENST00000577646 N/A N/A N/A 1.223±0.00 N/A N/A 0.622±0.00 N/A N/A N/A N/A 3.842±0.00 N/A N/A
ENST00000579727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.579±0.00 N/A N/A N/A
ENST00000582914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617726 N/A N/A N/A N/A N/A N/A N/A N/A 1.292±0.91 0.677±0.00 N/A 6.641±0.25 9.074±2.54 5.411±0.00
ENSG00000183153 ENST00000578689 N/A N/A 1.066±0.00 0.487±0.00 N/A N/A N/A 4.802±0.00 N/A N/A 1.696±1.39 9.215±0.00 6.488±2.59 2.582±0.00
ENSG00000265666 ENST00000581080 N/A N/A 0.744±0.00 N/A N/A 0.299±0.00 N/A 3.803±0.00 N/A N/A 1.876±0.00 N/A N/A N/A
ENSG00000266208 ENST00000578774 2.661±0.00 6.412±0.00 0.205±0.00 0.128±0.00 3.385±0.00 0.868±0.49 0.609±0.57 1.413±1.22 0.976±0.94 0.908±0.00 0.235±0.00 1.064±0.48 2.665±0.53 1.722±0.46
ENSG00000278918 ENST00000623156 N/A N/A N/A N/A N/A 0.122±0.00 N/A N/A 0.408±0.00 8.741±0.00 N/A 6.398±0.00 2.771±0.00 7.657±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037992 ENSMUST00000068133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.319±0.00 N/A N/A N/A
ENSMUST00000107473 2.864±0.59 2.216±0.53 1.657±0.51 1.152±0.30 4.028±2.08 5.760±0.74 0.508±0.08 1.207±0.14 1.508±0.78 6.889±1.40 0.572±0.21 4.098±1.51 1.530±0.88 2.492±0.29
ENSMUST00000107474 N/A N/A N/A 1.713±0.22 N/A N/A N/A N/A 0.356±0.00 N/A N/A 3.544±0.99 1.532±0.54 1.808±0.44
ENSMUST00000107475 2.879±0.26 7.183±3.33 2.787±1.23 2.307±1.66 10.344±2.92 6.642±1.80 1.100±0.40 2.016±1.34 2.009±1.06 9.807±4.35 1.725±0.47 8.596±2.25 1.795±0.74 3.135±0.56
ENSMUST00000139399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164748 N/A N/A N/A N/A N/A N/A N/A N/A 0.542±0.00 N/A 1.882±0.27 N/A N/A N/A
ENSMUSG00000047197 ENSMUST00000062931 0.277±0.21 0.208±0.07 0.311±0.08 0.817±0.12 0.316±0.15 1.032±0.40 0.591±0.20 0.164±0.11 0.046±0.02 0.148±0.08 N/A 1.854±0.98 0.069±0.03 0.189±0.00
ENSMUSG00000064491 ENSMUST00000082557 N/A N/A N/A 18.287±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2140.610±0.00

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