C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoic acid receptor, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107475 Rara-002 ENSMUSG00000037992 10090 + 11:98937698-98974162 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107475
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107475 2.879±0.26 7.183±3.33 2.787±1.23 2.307±1.66 10.344±2.92 6.642±1.80 1.100±0.40 2.016±1.34 2.009±1.06 9.807±4.35 1.725±0.47 8.596±2.25 1.795±0.74 3.135±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0002 VISTA 11:98447152-99051430
CIL_0002GL CIL_0002GL_0002 CGP 11:98907801-98974942
CIL_00050G CIL_00050G_0002 CGP 11:98927818-98983016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001012 IDA RNA polymerase II regulatory region DNA binding
GO:0001657 IMP ureteric bud development
GO:0001843 IGI neural tube closure
GO:0002068 IGI glandular epithelial cell development
GO:0003148 IGI outflow tract septum morphogenesis
GO:0003417 IGI growth plate cartilage development
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003708 IDA retinoic acid receptor activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007281 IMP germ cell development
GO:0007283 IMP spermatogenesis
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0008284 IGI positive regulation of cell proliferation
GO:0010628 IMP positive regulation of gene expression
GO:0010629 IGI negative regulation of gene expression
GO:0030425 IDA dendrite
GO:0030852 IMP regulation of granulocyte differentiation
GO:0031076 IGI embryonic camera-type eye development
GO:0032526 IMP response to retinoic acid
GO:0035264 IGI multicellular organism growth
GO:0043025 IDA neuronal cell body
GO:0043066 IGI negative regulation of apoptotic process
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA sequence-specific DNA binding
GO:0044212 IMP transcription regulatory region DNA binding
GO:0045596 IMP negative regulation of cell differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0045947 IDA negative regulation of translational initiation
GO:0055012 IMP ventricular cardiac muscle cell differentiation
GO:0060010 IMP Sertoli cell fate commitment
GO:0060173 IGI limb development
GO:0060324 IGI face development
GO:0060348 IGI bone development
GO:0060534 IMP trachea cartilage development
GO:0060591 IMP chondroblast differentiation
GO:0061037 IMP negative regulation of cartilage development
GO:0071222 IDA cellular response to lipopolysaccharide

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254066 RARA-001 protein_coding Homo_sapiens 0 2254
ENST00000330688 RARB-001 protein_coding Homo_sapiens 0 592
ENST00000383772 RARB-005 protein_coding Homo_sapiens 0 569
ENST00000394081 RARA-004 protein_coding Homo_sapiens 0 1773
ENST00000394086 RARA-003 protein_coding Homo_sapiens 0 1773
ENST00000394089 RARA-002 protein_coding Homo_sapiens 0 2351
ENST00000420042 RARA-006 processed_transcript Homo_sapiens 0 1245
ENST00000425707 RARA-007 protein_coding Homo_sapiens 0 1354
ENST00000437042 RARB-002 protein_coding Homo_sapiens 0 592
ENST00000458646 RARB-004 protein_coding Homo_sapiens 0 592
ENST00000462272 RARB-008 processed_transcript Homo_sapiens 0 335
ENST00000475125 RARA-005 protein_coding Homo_sapiens 0 1090
ENST00000479097 RARB-009 processed_transcript Homo_sapiens 2e-40 171
ENST00000480001 RARB-007 processed_transcript Homo_sapiens 0 335
ENST00000489694 RARB-006 processed_transcript Homo_sapiens 8e-17 92
ENST00000577646 RARA-008 protein_coding Homo_sapiens 0 512
ENST00000579727 RARA-010 processed_transcript Homo_sapiens 0 257
ENST00000617726 RARA-201 protein_coding Homo_sapiens 0 1748

Loading