C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420584 TAF11-201 ENSG00000064995 9606 - 6:34877778-34888071 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000420584
Transcript ID Muscle
ENST00000420584 1.936±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000259 CIL_000259_0001 CGP 6:34757406-34883138
CIL_0002EW CIL_0002EW_0001 CGP 6:34792015-34888089
CIL_0002EV CIL_0002EV_0001 CGP 6:34877778-35091413

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA transcription factor TFIID complex
GO:0005794 IDA Golgi apparatus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IC transcription from RNA polymerase II promoter
GO:0006367 IC:IEA transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0042809 IPI vitamin D receptor binding
GO:0043923 IDA positive regulation by host of viral transcription
GO:0046966 IPI thyroid hormone receptor binding
GO:0046982 IEA protein heterodimerization activity
GO:0047485 IPI protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025057 Taf11-201 protein_coding Mus_musculus 0 385
ENSMUST00000114848 Taf11-001 protein_coding Mus_musculus 0 385
ENSMUST00000155667 Taf11-002 processed_transcript Mus_musculus 1e-28 132

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