C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dendrin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421952 DDN-001 ENSG00000181418 9606 - 12:48995149-48999309 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleENST00000421952
Transcript ID Brain Muscle
ENST00000421952 34.935±23.66 116.334±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000D CIL_00000D_0001 CGP 12:48978453-48999309
CIL_00000E CIL_00000E_0001 CGP 12:48995149-49019197

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000982 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0030425 IEA dendrite
GO:0042995 IDA cell projection
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075444 Ddn-201 protein_coding Mus_musculus 0 1816
ENSMUST00000087225 Pnkd-004 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000087226 Pnkd-002 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000027370 Pnkd-001 protein_coding Mus_musculus 0.0000001 64

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