C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422215 RP11-307O1.1-001 ENSG00000227854 9606 - 1:239052748-239052903 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalLiverLungMuscleOvaryENST00000422215
Transcript ID Adipose Adrenal Liver Lung Muscle Ovary
ENST00000422215 0.097±0.00 0.303±0.00 0.167±0.00 0.175±0.00 0.086±0.00 10.833±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 0 217
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 0 217
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 4.06377e-44 180
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 9.94922e-44 178
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 9.94922e-44 178
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 6.00036e-42 172
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 1e-39 165
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 2e-37 158
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 6e-37 156
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 3e-35 150
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 4e-34 147
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 1e-29 132

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