C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080813 Rps17-001 ENSMUSG00000061787 10090 - 7:81342733-81345254 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080813
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080813 603.301±167.81 313.453±14.87 961.667±88.96 363.922±244.33 548.176±77.82 771.957±64.48 411.999±80.54 711.337±16.04 750.637±403.60 458.383±68.85 446.313±32.49 1555.224±471.20 693.237±452.27 337.072±152.42

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000028 IBA ribosomal small subunit assembly
GO:0003735 ISO structural constituent of ribosome
GO:0005925 IEA focal adhesion
GO:0006364 IEA rRNA processing
GO:0006412 ISO translation
GO:0006414 IBA translational elongation
GO:0016020 IEA membrane
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0034101 IEA erythrocyte homeostasis
GO:0042274 IEA ribosomal small subunit biogenesis
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330244 RPS17-001 protein_coding Homo_sapiens 0 564
ENST00000405686 RP11-448N11.2-001 unprocessed_pseudogene Homo_sapiens 0 239
ENST00000423610 SC22CB-1E7.1-001 processed_pseudogene Homo_sapiens 0 472
ENST00000450126 RP11-277B15.1-001 processed_pseudogene Homo_sapiens 0 351
ENST00000461663 RPS17P2-001 processed_pseudogene Homo_sapiens 0 424
ENST00000506193 RP11-478C6.4-001 processed_pseudogene Homo_sapiens 7e-36 152
ENST00000558397 RPS17-009 non_stop_decay Homo_sapiens 0 425
ENST00000559273 RPS17-006 retained_intron Homo_sapiens 0 259
ENST00000559776 RPS17-008 retained_intron Homo_sapiens 0 339
ENST00000560229 RPS17-002 retained_intron Homo_sapiens 0 503
ENST00000560612 RPS17-003 retained_intron Homo_sapiens 0 405
ENST00000560639 RPS17-007 retained_intron Homo_sapiens 0 374
ENST00000561068 RPS17-010 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000561157 RPS17-005 protein_coding Homo_sapiens 0 453
ENST00000561440 RPS17-004 retained_intron Homo_sapiens 0 217
ENST00000617731 RPS17L-201 protein_coding Homo_sapiens 0 564

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