C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12034
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119032 Gm12034-001 ENSMUSG00000083878 10090 + 11:20446412-20446810 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119032
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119032 0.154±0.02 0.291±0.00 0.369±0.27 0.262±0.15 0.273±0.08 0.254±0.00 0.385±0.16 0.273±0.29 0.398±0.06 0.208±0.11 0.330±0.20 0.314±0.26 2.989±2.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OP CIL_0004OP_0002 CGP 11:20302180-20653021

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330244 RPS17-001 protein_coding Homo_sapiens 0 475
ENST00000405686 RP11-448N11.2-001 unprocessed_pseudogene Homo_sapiens 0 239
ENST00000423610 SC22CB-1E7.1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000450126 RP11-277B15.1-001 processed_pseudogene Homo_sapiens 0 315
ENST00000461663 RPS17P2-001 processed_pseudogene Homo_sapiens 0 394
ENST00000506193 RP11-478C6.4-001 processed_pseudogene Homo_sapiens 2e-37 158
ENST00000558397 RPS17-009 non_stop_decay Homo_sapiens 0 383
ENST00000559273 RPS17-006 retained_intron Homo_sapiens 0 198
ENST00000559776 RPS17-008 retained_intron Homo_sapiens 0 315
ENST00000560229 RPS17-002 retained_intron Homo_sapiens 0 475
ENST00000560612 RPS17-003 retained_intron Homo_sapiens 0 385
ENST00000560639 RPS17-007 retained_intron Homo_sapiens 0 315
ENST00000561068 RPS17-010 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000561157 RPS17-005 protein_coding Homo_sapiens 0 385
ENST00000561440 RPS17-004 retained_intron Homo_sapiens 0 198
ENST00000617731 RPS17L-201 protein_coding Homo_sapiens 0 475

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