C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DENN/MADD domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424248 DENND3-202 ENSG00000105339 9606 + 8:141136626-141195511 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungOvaryPlacentaENST00000424248
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Ovary Placenta
ENST00000424248 6.556±0.00 4.447±0.00 2.207±0.00 1.860±0.00 1.054±0.35 1.097±0.82 5.546±0.00 2.172±0.00 1.843±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FQ CIL_0006FQ_0002 CGP 8:140657900-141195808
CIL_0007WG CIL_0007WG_0001 VISTA 8:141111247-141716252
CIL_0000X9 CIL_0000X9_0002 CGP 8:141117278-141308305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008333 ISS endosome to lysosome transport
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0032851 IDA positive regulation of Rab GTPase activity
GO:0044257 ISS cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162488 Dennd3-002 protein_coding Mus_musculus 0 2368
ENSMUST00000043414 Dennd3-001 protein_coding Mus_musculus 0 1572
ENSMUST00000173292 Dennd3-008 nonsense_mediated_decay Mus_musculus 0 1375

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