C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DENN/MADD domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043414 Dennd3-001 ENSMUSG00000036661 10090 + 15:73512560-73572242 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043414
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043414 3.572±0.64 2.013±0.52 2.870±0.04 0.404±0.00 4.440±1.23 4.048±0.60 2.375±0.89 8.873±1.22 0.833±0.35 26.286±3.92 0.650±0.29 3.633±0.87 0.955±0.62 0.487±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FQ CIL_0006FQ_0003 CGP 15:73205105-73572242
CIL_0007WG CIL_0007WG_0002 VISTA 15:73439611-74047146
CIL_0000X9 CIL_0000X9_0003 CGP 15:73512560-73645762

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008333 IGI endosome to lysosome transport
GO:0017112 IGI Rab guanyl-nucleotide exchange factor activity
GO:0032851 IGI positive regulation of Rab GTPase activity
GO:0044257 IMP cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262585 DENND3-201 protein_coding Homo_sapiens 0 2488
ENST00000424248 DENND3-202 protein_coding Homo_sapiens 0 1572
ENST00000511259 RP11-796L2.1-001 processed_pseudogene Homo_sapiens 0 220
ENST00000518668 DENND3-002 protein_coding Homo_sapiens 0 1572
ENST00000519811 DENND3-001 protein_coding Homo_sapiens 0 2569
ENST00000520482 DENND3-005 retained_intron Homo_sapiens 0 867
ENST00000523066 DENND3-019 processed_transcript Homo_sapiens 0 219

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