C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: septin 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425198 SEPT7-003 ENSG00000122545 9606 + 7:35832798-35905305 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000425198
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000425198 1.162±0.00 4.003±0.00 3.486±0.00 2.119±0.00 1.471±0.00 1.298±0.00 2.706±0.00 4.763±0.00 0.257±0.00 2.269±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091L CIL_00091L_0001 VISTA 7:35251004-35852019
CIL_0005M2 CIL_0005M2_0001 CGP 7:35632659-35907105
CIL_0001SS CIL_0001SS_0001 CGP 7:35800932-36301543

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0007049 IEA cell cycle
GO:0015629 IDA actin cytoskeleton
GO:0015630 IDA microtubule cytoskeleton
GO:0031105 IEA septin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165594 Sept7-202 protein_coding Mus_musculus 0 1685
ENSMUST00000115272 Sept7-201 protein_coding Mus_musculus 0 1685
ENSDART00000074575 SEPT7 (1 of 2)-201 protein_coding Danio_rerio 0 676
ENSDART00000148631 SEPT7 (1 of 2)-001 protein_coding Danio_rerio 0 675
ENSDART00000150132 SEPT7 (1 of 2)-002 protein_coding Danio_rerio 0 278
ENSDART00000149771 SEPT7 (1 of 2)-003 retained_intron Danio_rerio 2e-23 117

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