C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide E pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425442 SNRPEP5-001 ENSG00000225642 9606 + 2:8603082-8603359 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyOvaryENST00000425442
Transcript ID Adipose Adrenal Breast Colon Kidney Ovary
ENST00000425442 0.043±0.00 0.043±0.00 0.041±0.00 0.039±0.00 1.526±0.00 1.124±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099S CIL_00099S_0001 VISTA 2:8341264-8943461

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166915 Snrpe-001 protein_coding Mus_musculus 0 359
ENSMUST00000121967 Gm14284-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000172079 Snrpe-005 nonsense_mediated_decay Mus_musculus 0 303
ENSMUST00000164096 Snrpe-002 protein_coding Mus_musculus 0 281
ENSMUST00000118757 Gm15553-001 processed_pseudogene Mus_musculus 0 195

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