C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 2 pseudogene 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425872 HMGN2P17-001 ENSG00000238249 9606 + 1:8893409-8894151 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000425872
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000425872 0.760±0.00 0.783±0.00 0.800±0.00 0.380±0.00 0.946±0.00 0.370±0.00 1.588±0.00 0.229±0.00 1.464±0.00 1.037±0.00 3.646±0.00 1.706±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 686
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 673
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 671
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 0 645
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 627
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 558
ENSMUST00000188317 RP24-447G12.2-001 protein_coding Mus_musculus 0 529
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 0 518
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 505
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 492
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 484
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 481
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 0 366
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000153622 Hmgn2-013 retained_intron Mus_musculus 0 346
ENSMUST00000136327 Hmgn2-006 protein_coding Mus_musculus 0 346
ENSMUST00000120716 Hmgn2-ps1-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000189471 RP24-176P22.2-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000115986 Hmgn2l6-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 0 324
ENSMUST00000165525 Gm16494-201 protein_coding Mus_musculus 0 296
ENSMUST00000097278 Gm6594-201 protein_coding Mus_musculus 0 296
ENSMUST00000184601 Gm10105-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000071770 Gm5899-201 processed_pseudogene Mus_musculus 0 267
ENSMUST00000177675 Gm20379-201 processed_pseudogene Mus_musculus 0 250
ENSMUST00000120815 Gm14069-001 unprocessed_pseudogene Mus_musculus 0 244
ENSMUST00000153501 Gm16510-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000136859 Hmgn2-008 retained_intron Mus_musculus 0 191

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