C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 3 pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425942 TPM3P4-001 ENSG00000214869 9606 + 7:27023737-27024907 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLungMuscleTestisENST00000425942
Transcript ID Adrenal Brain Breast Heart Kidney Lung Muscle Testis
ENST00000425942 0.018±0.00 0.107±0.00 0.018±0.00 0.033±0.00 0.037±0.00 0.095±0.00 0.081±0.00 0.079±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0003PD CIL_0003PD_0001 CGP 7:26667062-27095996
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029549 Tpm3-003 protein_coding Mus_musculus 0 815
ENSMUST00000072359 Tpm3-rs7-201 protein_coding Mus_musculus 0 815
ENSMUST00000062193 Tpm3-201 protein_coding Mus_musculus 0 706
ENSMUST00000119570 Tpm3-001 protein_coding Mus_musculus 0 706
ENSMUST00000119158 Tpm3-005 protein_coding Mus_musculus 0 564
ENSMUST00000118566 Tpm3-004 protein_coding Mus_musculus 0 564
ENSMUST00000121503 Tpm3-002 protein_coding Mus_musculus 0 455
ENSMUST00000116350 Tpm3-rs2-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000133361 Tpm3-013 retained_intron Mus_musculus 0 307
ENSMUST00000133281 Tpm3-010 retained_intron Mus_musculus 0 307
ENSMUST00000149734 Tpm3-014 retained_intron Mus_musculus 0 220
ENSMUST00000143281 Tpm3-015 retained_intron Mus_musculus 2e-39 167
ENSMUST00000131354 Tpm3-006 retained_intron Mus_musculus 2e-19 100

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