C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: glypican 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426280 GPC1-007 ENSG00000063660 9606 + 2:240454838-240462484 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TM CIL_0007TM_0001 VISTA 2:239957940-240560738
CIL_0009AE CIL_0009AE_0001 VISTA 2:240068562-240673577
CIL_0003NP CIL_0003NP_0001 CGP 2:240139026-240468078
CIL_0004UD CIL_0004UD_0002 CGP 2:240435671-240569209

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005886 IEA plasma membrane
GO:0016020 IEA membrane
GO:0031225 IEA anchored component of membrane
GO:0043395 IEA heparan sulfate proteoglycan binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000190586 Gpc1-003 retained_intron Mus_musculus 0 490
ENSMUST00000045970 Gpc1-001 protein_coding Mus_musculus 0 488

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