C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glypican 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045970 Gpc1-001 ENSMUSG00000034220 10090 + 1:92831645-92860779 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045970
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045970 14.713±9.07 18.960±1.25 2.579±0.99 37.176±15.55 7.203±3.18 6.561±1.87 78.204±31.64 3.186±1.27 0.900±0.49 7.825±2.91 45.267±21.62 32.537±14.17 25.080±9.04 3.062±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TM CIL_0007TM_0002 VISTA 1:92418794-93021273
CIL_0009AE CIL_0009AE_0002 VISTA 1:92485614-93089442
CIL_0003NP CIL_0003NP_0002 CGP 1:92644218-92860779
CIL_0004UD CIL_0004UD_0003 CGP 1:92831645-92902906

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005507 ISS copper ion binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005768 IEA endosome
GO:0005796 TAS Golgi lumen
GO:0005886 IEA plasma membrane
GO:0014037 ISS Schwann cell differentiation
GO:0017134 IDA fibroblast growth factor binding
GO:0030200 ISS heparan sulfate proteoglycan catabolic process
GO:0031225 IEA anchored component of membrane
GO:0032288 ISS myelin assembly
GO:0040037 IDA negative regulation of fibroblast growth factor receptor signaling pathway
GO:0043236 IDA laminin binding
GO:0043395 IEA heparan sulfate proteoglycan binding
GO:0045121 IDA membrane raft
GO:0070062 IEA extracellular vesicular exosome
GO:2001016 IEP positive regulation of skeletal muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264039 GPC1-001 protein_coding Homo_sapiens 0 2154
ENST00000420138 GPC1-002 protein_coding Homo_sapiens 0 1664
ENST00000425056 GPC1-009 protein_coding Homo_sapiens 0 1051
ENST00000426280 GPC1-007 protein_coding Homo_sapiens 0 488
ENST00000427506 GPC1-008 protein_coding Homo_sapiens 0 595
ENST00000455111 GPC1-010 protein_coding Homo_sapiens 0 874
ENST00000466624 GPC1-011 processed_transcript Homo_sapiens 5e-30 135
ENST00000469694 GPC1-004 retained_intron Homo_sapiens 0 865
ENST00000495100 GPC1-003 retained_intron Homo_sapiens 0 865

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