C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003NP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000178602-ENSG00000063660 CGP 9606 2:240139026-240468078
GeneTranscriptPositionBiotype
ENSG00000063660 (GPC1)
glypican 1 		ENST00000264039 (GPC1-001) 240435671-240468078 protein_coding
ENST00000420138 (GPC1-002) 240452811-240466330 protein_coding
ENST00000425056 (GPC1-009) 240457965-240464939 protein_coding
ENST00000426280 (GPC1-007) 240454838-240462484 protein_coding
ENST00000427506 (GPC1-008) 240457434-240462568 protein_coding
ENST00000455111 (GPC1-010) 240463397-240466200 protein_coding
ENST00000466624 (GPC1-011) 240465527-240466793 processed_transcript
ENST00000469694 (GPC1-004) 240442327-240466358 retained_intron
ENST00000495100 (GPC1-003) 240458187-240466358 retained_intron
ENSG00000178602 (OTOS)
otospiralin 		ENST00000319460 (OTOS-201) 240139029-240140656 protein_coding
ENST00000391989 (OTOS-001) 240139026-240144562 protein_coding
ENSG00000218416 (PP14571)
uncharacterized LOC100130449 		ENST00000404327 (PP14571-001) 240449418-240456714 antisense
ENST00000404891 (PP14571-002) 240449419-240456700 antisense
ENST00000471662 (PP14571-003) 240449315-240451543 retained_intron
ENST00000538012 (PP14571-004) 240450763-240452431 retained_intron
ENSG00000221412 (AC124861.2)
 ENST00000408485 (AC124861.2-201) 240261715-240261860 miRNA
ENSG00000227479 (AC124861.1)
 ENST00000457178 (AC124861.1-001) 240227560-240256035 lincRNA
CIL_0003NP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000044055-ENSMUSG00000034220 CGP 10090 1:92644218-92860779
GeneTranscriptPositionBiotype
ENSMUSG00000034220 (Gpc1)
glypican 1 		ENSMUST00000045970 (Gpc1-001) 92831645-92860779 protein_coding
ENSMUST00000190215 (Gpc1-005) 92856768-92857595 retained_intron
ENSMUST00000190586 (Gpc1-003) 92853198-92855968 retained_intron
ENSMUST00000190677 (Gpc1-004) 92856562-92857522 retained_intron
ENSMUST00000191373 (Gpc1-002) 92831969-92835677 processed_transcript
ENSMUSG00000044055 (Otos)
otospiralin 		ENSMUST00000053144 (Otos-001) 92644218-92648841 protein_coding
ENSMUST00000159803 (Otos-002) 92644219-92648254 retained_intron
ENSMUSG00000099665 (RP23-145J9.11)
predicted gene 29482 		ENSMUST00000187845 (RP23-145J9.11-001) 92759213-92760480 lincRNA
ENSMUSG00000100546 (RP23-145J9.10)
predicted gene 29483 		ENSMUST00000188188 (RP23-145J9.10-001) 92714234-92717202 lincRNA
ENSMUSG00000100781 (RP24-108K12.1)
predicted gene 29481 		ENSMUST00000189080 (RP24-108K12.1-001) 92820958-92837896 antisense
ENSMUSG00000101995 (RP24-108K12.3)
predicted gene 29480 		ENSMUST00000188589 (RP24-108K12.3-001) 92842177-92848771 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NP_0001ENSG00000063660ENST00000264039ENST00000420138ENST00000425056ENST00000426280ENST00000427506ENST00000455111ENST00000466624ENST00000469694ENST00000495100ENSG00000178602ENST00000319460ENST00000391989ENSG00000218416ENST00000404327ENST00000404891ENST00000471662ENST00000538012ENSG00000221412ENST00000408485ENSG00000227479ENST00000457178CIL_0003NP_0002ENSMUSG00000034220ENSMUST00000045970ENSMUST00000190215ENSMUST00000190586ENSMUST00000190677ENSMUST00000191373ENSMUSG00000044055ENSMUST00000053144ENSMUST00000159803ENSMUSG00000099665ENSMUST00000187845ENSMUSG00000100546ENSMUST00000188188ENSMUSG00000100781ENSMUST00000189080ENSMUSG00000101995ENSMUST00000188589
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NP_0001ENSG00000063660ENST00000264039ENST00000420138ENST00000425056ENST00000455111ENST00000466624ENST00000495100ENSG00000178602ENST00000319460ENST00000391989ENSG00000218416ENST00000404327ENST00000404891ENST00000471662ENST00000538012ENSG00000221412ENST00000408485ENSG00000227479ENST00000457178CIL_0003NP_0002ENSMUSG00000034220ENSMUST00000045970ENSMUST00000190586ENSMUSG00000044055ENSMUST00000053144ENSMUST00000159803ENSMUSG00000099665ENSMUST00000187845ENSMUSG00000100546ENSMUST00000188188ENSMUSG00000100781ENSMUST00000189080ENSMUSG00000101995ENSMUST00000188589
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000063660 ENST00000264039 18.305±0.00 9.621±0.00 0.450±0.00 16.671±15.04 18.404±16.86 7.866±6.89 29.166±27.46 15.961±12.29 12.329±10.63 5.487±5.12 23.649±17.80 37.357±32.16 31.902±4.64 27.273±13.32
ENST00000420138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.774±0.00 8.851±0.00
ENST00000425056 N/A N/A 2.017±0.00 N/A 1.994±0.00 1.038±0.00 N/A N/A N/A 1.064±0.00 N/A N/A N/A N/A
ENST00000426280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455111 N/A N/A N/A N/A N/A N/A N/A N/A 1.277±0.00 N/A N/A N/A N/A N/A
ENST00000466624 N/A N/A 0.752±0.00 5.091±0.00 1.453±0.00 N/A N/A N/A 2.858±0.00 1.257±0.00 N/A 34.039±0.00 53.038±0.00 23.840±0.00
ENST00000469694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495100 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.169±0.00 N/A 0.780±0.00 N/A N/A
ENSG00000178602 ENST00000319460 N/A N/A N/A 2.413±0.00 N/A N/A 0.350±0.00 0.196±0.00 N/A N/A N/A 0.526±0.00 N/A 0.114±0.00
ENST00000391989 N/A N/A N/A 1.168±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000218416 ENST00000404327 N/A 0.020±0.00 N/A 0.513±0.00 0.021±0.00 0.137±0.00 0.059±0.04 N/A N/A 0.076±0.00 0.163±0.00 0.160±0.02 12.452±6.24 0.314±0.14
ENST00000404891 N/A N/A N/A 0.124±0.06 0.104±0.00 N/A N/A 0.096±0.00 0.129±0.00 N/A N/A 0.114±0.00 4.420±3.21 0.127±0.07
ENST00000471662 N/A N/A N/A N/A N/A 0.023±0.00 N/A N/A N/A 0.165±0.00 N/A 0.095±0.00 2.884±0.31 0.185±0.00
ENST00000538012 N/A 0.018±0.00 N/A N/A N/A 0.284±0.00 N/A N/A N/A N/A N/A 0.058±0.00 2.668±0.22 0.115±0.00
ENSG00000221412 ENST00000408485 N/A N/A N/A N/A N/A N/A N/A N/A 3.866±0.00 N/A N/A N/A N/A N/A
ENSG00000227479 ENST00000457178 N/A N/A N/A N/A N/A N/A 0.040±0.00 0.132±0.00 N/A N/A N/A 0.160±0.00 0.220±0.14 0.078±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034220 ENSMUST00000045970 14.713±9.07 18.960±1.25 2.579±0.99 37.176±15.55 7.203±3.18 6.561±1.87 78.204±31.64 3.186±1.27 0.900±0.49 7.825±2.91 45.267±21.62 32.537±14.17 25.080±9.04 3.062±0.43
ENSMUST00000190215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190586 N/A N/A N/A N/A N/A N/A N/A N/A 0.523±0.00 N/A N/A N/A N/A N/A
ENSMUST00000190677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000044055 ENSMUST00000053144 0.316±0.16 0.395±0.27 0.034±0.00 0.119±0.00 0.354±0.14 0.172±0.10 0.091±0.00 0.241±0.08 0.103±0.06 0.092±0.03 0.093±0.02 0.203±0.10 0.105±0.06 0.099±0.00
ENSMUST00000159803 0.021±0.01 0.043±0.00 0.021±0.00 0.031±0.01 0.068±0.03 0.029±0.00 0.030±0.00 0.031±0.00 0.038±0.02 0.023±0.00 N/A 0.048±0.01 0.039±0.02 0.012±0.00
ENSMUSG00000099665 ENSMUST00000187845 0.885±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.682±4.79
ENSMUSG00000100546 ENSMUST00000188188 N/A 0.058±0.00 N/A 0.083±0.07 0.078±0.03 0.059±0.00 0.146±0.05 N/A 0.024±0.01 0.035±0.00 0.070±0.02 0.507±0.45 0.008±0.00 0.083±0.02
ENSMUSG00000100781 ENSMUST00000189080 N/A N/A N/A 0.007±0.00 N/A N/A 0.032±0.00 N/A 0.006±0.00 N/A 0.071±0.05 0.099±0.07 0.037±0.00 N/A
ENSMUSG00000101995 ENSMUST00000188589 0.067±0.05 0.156±0.05 0.043±0.02 0.139±0.03 0.050±0.03 0.055±0.02 0.102±0.02 0.035±0.02 0.006±0.00 0.023±0.00 0.046±0.02 0.087±0.05 0.055±0.03 0.019±0.00

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