C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427262 SEMA3E-002 ENSG00000170381 9606 - 7:83367485-83641431 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000427262
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000427262 0.565±0.00 0.142±0.00 0.093±0.00 2.064±0.00 1.281±0.00 0.605±0.23 2.354±2.30 0.541±0.00 0.044±0.02 0.090±0.03 0.404±0.36 0.346±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001569 ISS patterning of blood vessels
GO:0001953 ISS negative regulation of cell-matrix adhesion
GO:0002040 ISS sprouting angiogenesis
GO:0004872 IEA receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005615 TAS extracellular space
GO:0007275 IEA multicellular organismal development
GO:0007411 TAS axon guidance
GO:0008360 ISS regulation of cell shape
GO:0016020 IEA membrane
GO:0016525 ISS negative regulation of angiogenesis
GO:0050808 ISS synapse organization
GO:0071526 ISS semaphorin-plexin signaling pathway
GO:2000249 ISS regulation of actin cytoskeleton reorganization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073957 Sema3e-001 protein_coding Mus_musculus 0 2340
ENSMUST00000130116 Sema3e-002 retained_intron Mus_musculus 0 1615

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