C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 2 pseudogene 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427352 HMGN2P27-001 ENSG00000232916 9606 - 5:116218026-116218295 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartMuscleTestisENST00000427352
Transcript ID Colon Heart Muscle Testis
ENST00000427352 0.068±0.00 0.281±0.00 0.068±0.00 0.064±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DV CIL_0002DV_0001 CGP 5:116051466-116412762
CIL_0004L9 CIL_0004L9_0001 CGP 5:116084991-116574934

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 366
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 366
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 366
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 366
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 0 361
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 348
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 348
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 348
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 344
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 344
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000120716 Hmgn2-ps1-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000189471 RP24-176P22.2-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 0 339
ENSMUST00000115986 Hmgn2l6-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000153622 Hmgn2-013 retained_intron Mus_musculus 0 313
ENSMUST00000136327 Hmgn2-006 protein_coding Mus_musculus 0 313
ENSMUST00000184601 Gm10105-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000071770 Gm5899-201 processed_pseudogene Mus_musculus 0 278
ENSMUST00000074801 Gm10298-201 processed_pseudogene Mus_musculus 0 274
ENSMUST00000118775 Gm15195-001 processed_pseudogene Mus_musculus 0 268
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 0 239
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 0 239
ENSMUST00000136859 Hmgn2-008 retained_intron Mus_musculus 3e-28 128

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