C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004L9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145781-ENSG00000092421 CGP 9606 5:116084991-116574934
GeneTranscriptPositionBiotype
ENSG00000092421 (SEMA6A)
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 		ENST00000257414 (SEMA6A-002) 116445750-116574395 protein_coding
ENST00000343348 (SEMA6A-001) 116443616-116574934 protein_coding
ENST00000502996 (SEMA6A-011) 116486749-116495445 processed_transcript
ENST00000503402 (SEMA6A-012) 116482459-116487229 retained_intron
ENST00000503865 (SEMA6A-006) 116446464-116449646 protein_coding
ENST00000503962 (SEMA6A-010) 116488915-116502677 processed_transcript
ENST00000506114 (SEMA6A-014) 116447688-116480279 processed_transcript
ENST00000509665 (SEMA6A-009) 116496251-116554896 protein_coding
ENST00000510024 (SEMA6A-013) 116486641-116489009 retained_intron
ENST00000510263 (SEMA6A-003) 116446613-116536458 protein_coding
ENST00000512156 (SEMA6A-007) 116550115-116574234 processed_transcript
ENST00000513137 (SEMA6A-005) 116446134-116469544 protein_coding
ENST00000514316 (SEMA6A-015) 116478266-116480240 processed_transcript
ENST00000515009 (SEMA6A-008) 116491796-116536428 protein_coding
ENST00000515129 (SEMA6A-004) 116446134-116478677 protein_coding
ENSG00000145781 (COMMD10)
COMM domain containing 10 		ENST00000274458 (COMMD10-001) 116084991-116293287 protein_coding
ENST00000503424 (COMMD10-006) 116292457-116412762 processed_transcript
ENST00000506589 (COMMD10-004) 116091079-116292916 protein_coding
ENST00000507356 (COMMD10-003) 116085016-116292718 nonsense_mediated_decay
ENST00000508250 (COMMD10-005) 116291539-116306923 processed_transcript
ENST00000515539 (COMMD10-002) 116085474-116292657 protein_coding
ENSG00000212457 (RNU6-644P)
RNA, U6 small nuclear 644, pseudogene 		ENST00000391155 (RNU6-644P-201) 116188455-116188552 snRNA
ENSG00000232916 (HMGN2P27)
high mobility group nucleosomal binding domain 2 pseudogene 27 		ENST00000427352 (HMGN2P27-001) 116218026-116218295 processed_pseudogene
ENSG00000239528 (RPS14P8)
ribosomal protein S14 pseudogene 8 		ENST00000478778 (RPS14P8-001) 116562562-116562930 processed_pseudogene
ENSG00000250015 (CTC-339F2.2)
 ENST00000507813 (CTC-339F2.2-001) 116302354-116304134 lincRNA
ENSG00000271918 (CTD-2287O16.5)
 ENST00000606662 (CTD-2287O16.5-001) 116083807-116085416 antisense
CIL_0004L9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042705-ENSMUSG00000019647 CGP 10090 18:46958862-47368870
GeneTranscriptPositionBiotype
ENSMUSG00000019647 (Sema6a)
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 		ENSMUST00000019791 (Sema6a-001) 47245254-47368830 protein_coding
ENSMUST00000076043 (Sema6a-003) 47247438-47368446 protein_coding
ENSMUST00000115449 (Sema6a-201) 47245255-47368868 protein_coding
ENSMUST00000123228 (Sema6a-010) 47235598-47281195 protein_coding
ENSMUST00000126684 (Sema6a-008) 47291894-47333326 protein_coding
ENSMUST00000135790 (Sema6a-004) 47247440-47368448 protein_coding
ENSMUST00000141224 (Sema6a-005) 47275643-47368868 retained_intron
ENSMUST00000144223 (Sema6a-009) 47303674-47368268 retained_intron
ENSMUST00000151382 (Sema6a-006) 47275658-47368870 retained_intron
ENSMUST00000156422 (Sema6a-007) 47248383-47333348 protein_coding
ENSMUSG00000042705 (Commd10)
COMM domain containing 10 		ENSMUST00000049388 (Commd10-201) 46958862-47087992 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004L9_0001ENSG00000092421ENST00000257414ENST00000343348ENST00000502996ENST00000503402ENST00000503865ENST00000503962ENST00000506114ENST00000509665ENST00000510024ENST00000510263ENST00000512156ENST00000513137ENST00000514316ENST00000515009ENST00000515129ENSG00000145781ENST00000274458ENST00000503424ENST00000506589ENST00000507356ENST00000508250ENST00000515539ENSG00000212457ENST00000391155ENSG00000232916ENST00000427352ENSG00000239528ENST00000478778ENSG00000250015ENST00000507813ENSG00000271918ENST00000606662CIL_0004L9_0002ENSMUSG00000019647ENSMUST00000019791ENSMUST00000076043ENSMUST00000115449ENSMUST00000123228ENSMUST00000126684ENSMUST00000135790ENSMUST00000141224ENSMUST00000144223ENSMUST00000151382ENSMUST00000156422ENSMUSG00000042705ENSMUST00000049388
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004L9_0001ENSG00000092421ENST00000257414ENST00000343348ENST00000509665ENST00000510263ENST00000513137ENST00000514316ENST00000515009ENST00000515129ENSG00000145781ENST00000274458ENST00000507356ENST00000508250ENST00000515539ENSG00000212457ENST00000391155ENSG00000232916ENST00000427352ENSG00000239528ENST00000478778ENSG00000250015ENST00000507813ENSG00000271918ENST00000606662CIL_0004L9_0002ENSMUSG00000019647ENSMUST00000019791ENSMUST00000076043ENSMUST00000115449ENSMUST00000126684ENSMUST00000135790ENSMUST00000156422ENSMUSG00000042705ENSMUST00000049388
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000092421 ENST00000257414 N/A N/A N/A 10.167±0.00 N/A N/A N/A N/A 0.824±0.00 4.867±0.00 0.118±0.00 N/A 3.505±0.20 N/A
ENST00000343348 5.349±0.00 5.637±0.00 0.785±0.00 3.872±0.50 2.057±1.57 2.556±0.46 0.482±0.34 0.472±0.14 0.978±0.00 2.290±0.16 0.197±0.00 2.450±0.40 6.431±3.26 0.956±0.21
ENST00000502996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.761±0.00 N/A N/A N/A
ENST00000510024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.093±0.00 N/A N/A
ENST00000512156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513137 N/A N/A 0.999±0.00 N/A 0.993±0.00 3.724±0.00 0.380±0.00 N/A N/A 2.329±0.00 0.382±0.00 N/A N/A N/A
ENST00000514316 N/A N/A 9.538±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515009 N/A N/A N/A N/A 6.236±0.00 N/A N/A N/A N/A 11.803±0.00 N/A 9.896±0.00 24.978±0.00 N/A
ENST00000515129 N/A N/A N/A N/A N/A N/A N/A 1.409±0.00 N/A 5.629±0.00 N/A 7.806±0.00 9.007±5.04 3.574±0.00
ENSG00000145781 ENST00000274458 3.892±0.00 8.565±0.00 1.678±0.00 3.271±1.66 6.060±2.21 4.995±1.83 5.633±3.73 7.240±5.63 3.454±0.68 4.451±0.89 0.798±0.64 4.673±3.47 5.511±2.45 8.335±0.00
ENST00000503424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507356 1.438±0.00 N/A N/A N/A N/A 2.711±0.00 1.001±0.00 N/A 1.276±0.00 2.400±0.00 1.692±0.00 N/A N/A 1.416±0.00
ENST00000508250 N/A N/A N/A N/A 3.261±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.199±0.00 4.632±0.00 N/A
ENSG00000212457 ENST00000391155 N/A 0.636±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232916 ENST00000427352 N/A N/A N/A N/A N/A 0.068±0.00 0.281±0.00 N/A N/A N/A 0.068±0.00 N/A N/A 0.064±0.00
ENSG00000239528 ENST00000478778 0.515±0.00 N/A N/A 0.108±0.00 1.143±0.68 0.164±0.00 0.899±0.81 0.254±0.00 0.044±0.00 0.799±0.36 0.086±0.00 1.320±0.23 N/A 0.090±0.00
ENSG00000250015 ENST00000507813 N/A 1.080±0.00 N/A N/A N/A N/A 0.609±0.00 N/A 0.062±0.00 N/A N/A 0.257±0.00 N/A 0.937±0.00
ENSG00000271918 ENST00000606662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.618±0.00 0.865±0.00 N/A 2.009±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019647 ENSMUST00000019791 0.463±0.08 N/A 0.712±0.00 4.665±2.14 N/A N/A 0.816±0.00 N/A 0.431±0.04 N/A 0.447±0.11 0.740±0.37 2.022±0.76 0.064±0.06
ENSMUST00000076043 1.859±0.69 0.984±0.00 0.597±0.18 5.525±2.87 1.370±0.62 2.315±0.03 1.213±0.18 1.258±0.35 0.597±0.33 5.787±2.77 0.510±0.11 1.730±0.46 5.640±2.42 0.167±0.10
ENSMUST00000115449 1.462±0.04 1.267±0.24 0.255±0.00 1.687±0.77 0.691±0.05 1.004±0.26 N/A N/A N/A N/A N/A 0.656±0.36 0.528±0.00 N/A
ENSMUST00000123228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126684 N/A N/A N/A 5.919±0.00 N/A N/A N/A N/A N/A N/A N/A 3.184±0.00 15.731±4.78 0.166±0.00
ENSMUST00000135790 0.700±0.00 N/A 0.704±0.00 4.121±2.11 0.402±0.08 N/A N/A 0.488±0.00 0.338±0.04 6.054±0.16 0.305±0.13 0.927±0.13 2.743±0.92 0.228±0.09
ENSMUST00000141224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156422 2.116±0.79 1.213±0.12 N/A 1.196±0.00 1.151±0.46 2.313±0.40 0.752±0.03 1.174±0.00 N/A 6.290±1.10 0.235±0.00 1.458±0.34 N/A 0.207±0.00
ENSMUSG00000042705 ENSMUST00000049388 11.921±0.87 3.356±0.73 17.775±0.20 10.103±6.11 7.839±1.91 6.404±1.35 4.831±0.54 9.300±0.56 5.373±2.19 10.675±1.30 1.841±0.29 8.822±3.24 11.286±7.21 4.457±1.98

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