C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valyl-tRNA synthetase 2, mitochondrial
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428017 VARS2-006 ENSG00000137411 9606 + 6:30914252-30917799 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverMuscleENST00000428017
Transcript ID Brain Colon Kidney Liver Muscle
ENST00000428017 1.853±0.00 1.184±0.00 7.510±0.00 1.227±0.00 1.682±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0006418 IEA tRNA aminoacylation for protein translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043674 Vars2-001 protein_coding Mus_musculus 0 1033
ENSMUST00000164978 Vars2-007 retained_intron Mus_musculus 0 656
ENSMUST00000171536 Vars2-009 retained_intron Mus_musculus 0 568
ENSMUST00000165144 Vars2-008 nonsense_mediated_decay Mus_musculus 0 457
ENSMUST00000165787 Vars2-003 retained_intron Mus_musculus 1.00053e-42 178

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