C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valyl-tRNA synthetase 2, mitochondrial (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164978 Vars2-007 ENSMUSG00000038838 10090 - 17:35664446-35666733 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaENSMUST00000164978
Transcript ID Brain Ovary Placenta
ENSMUST00000164978 9.931±0.00 22.841±0.00 6.130±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321897 VARS2-001 protein_coding Homo_sapiens 0 656
ENST00000383369 VARSL-001 protein_coding Homo_sapiens 0 656
ENST00000383540 VARS2-001 protein_coding Homo_sapiens 0 656
ENST00000411697 VARS2-006 protein_coding Homo_sapiens 0 656
ENST00000415079 VARS2-001 protein_coding Homo_sapiens 0 656
ENST00000425563 VARSL-006 protein_coding Homo_sapiens 0 656
ENST00000428017 VARS2-006 protein_coding Homo_sapiens 0 656
ENST00000428577 VARSL-001 protein_coding Homo_sapiens 0 656
ENST00000431578 VARSL-006 protein_coding Homo_sapiens 0 656
ENST00000446577 VARS2-006 protein_coding Homo_sapiens 0 656
ENST00000450090 VARS2-001 protein_coding Homo_sapiens 0 656
ENST00000452966 VARS2-006 protein_coding Homo_sapiens 0 656
ENST00000462413 VARS2-007 processed_transcript Homo_sapiens 0 656
ENST00000464084 VARSL-002 retained_intron Homo_sapiens 0 525
ENST00000467717 VARS2-007 processed_transcript Homo_sapiens 0 656
ENST00000469311 VARS2-002 retained_intron Homo_sapiens 0 525
ENST00000469489 VARSL-002 retained_intron Homo_sapiens 0 525
ENST00000470805 VARSL-007 processed_transcript Homo_sapiens 0 656
ENST00000475673 VARS2-002 retained_intron Homo_sapiens 0 525
ENST00000476017 VARSL-007 processed_transcript Homo_sapiens 0 656
ENST00000477288 VARS2-002 retained_intron Homo_sapiens 0 525
ENST00000484947 VARS2-007 processed_transcript Homo_sapiens 0 656
ENST00000493326 VARS2-002 retained_intron Homo_sapiens 0 525
ENST00000494657 VARS2-007 processed_transcript Homo_sapiens 0 656
ENST00000541562 VARS2-201 protein_coding Homo_sapiens 0 656
ENST00000542001 VARS2-202 protein_coding Homo_sapiens 0 656
ENST00000546854 VARS2-203 protein_coding Homo_sapiens 0 656
ENST00000547340 VARS2-203 protein_coding Homo_sapiens 0 656
ENST00000548165 VARSL-202 protein_coding Homo_sapiens 0 656
ENST00000548842 VARSL-201 protein_coding Homo_sapiens 0 656
ENST00000549458 VARS2-204 protein_coding Homo_sapiens 0 656
ENST00000549900 VARSL-204 protein_coding Homo_sapiens 0 656
ENST00000550773 VARS2-201 protein_coding Homo_sapiens 0 656
ENST00000551709 VARS2-204 protein_coding Homo_sapiens 0 656
ENST00000552560 VARS2-202 protein_coding Homo_sapiens 0 656
ENST00000553245 VARSL-203 protein_coding Homo_sapiens 0 656

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