C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: valyl-tRNA synthetase 2, mitochondrial
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137411 VARS2 9606 + 6:30908242-30926459 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000321897 VARS2-001 30914205-30926459 protein_coding
  ENST00000421263 VARS2-008 30914382-30915416 protein_coding
  ENST00000428017 VARS2-006 30914252-30917799 protein_coding
  ENST00000467717 VARS2-007 30914266-30917806 processed_transcript
  ENST00000469358 VARS2-003 30918764-30926459 retained_intron
  ENST00000473916 VARS2-005 30923208-30926459 retained_intron
  ENST00000476162 VARS2-004 30919826-30926459 processed_transcript
  ENST00000477052 VARS2-011 30922583-30923505 retained_intron
  ENST00000477288 VARS2-002 30908242-30926459 retained_intron
  ENST00000490699 VARS2-009 30916428-30917761 retained_intron
  ENST00000541562 VARS2-201 30914331-30926456 protein_coding
  ENST00000542001 VARS2-202 30914205-30926456 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321897ENST00000428017ENST00000467717ENST00000476162ENST00000477288ENST00000541562ENST00000542001
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321897 1.044±0.00 N/A N/A N/A N/A N/A 1.123±0.00 N/A N/A 1.010±0.28 N/A 2.561±0.00 N/A N/A
ENST00000428017 N/A N/A N/A 1.853±0.00 N/A 1.184±0.00 N/A 7.510±0.00 1.227±0.00 N/A 1.682±0.00 N/A N/A N/A
ENST00000467717 N/A N/A N/A N/A 2.357±0.00 N/A 0.652±0.00 N/A N/A N/A N/A 2.503±0.00 N/A N/A
ENST00000476162 N/A 6.237±0.00 N/A 3.350±0.00 2.775±0.00 1.610±0.00 N/A 7.119±0.00 4.906±0.00 N/A 2.803±0.00 6.363±1.40 2.826±0.75 4.036±1.39
ENST00000477288 N/A N/A N/A N/A N/A N/A N/A 0.920±0.00 N/A N/A N/A N/A N/A N/A
ENST00000541562 3.429±0.00 5.284±0.00 0.997±0.00 2.515±0.00 3.881±0.00 1.235±0.39 3.194±0.00 2.838±0.00 2.860±2.56 1.794±0.00 3.128±1.98 5.324±0.00 3.359±0.53 2.994±0.61
ENST00000542001 N/A N/A N/A N/A 0.409±0.00 0.347±0.00 N/A N/A N/A N/A N/A 1.775±0.73 N/A 2.163±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002161 IEA aminoacyl-tRNA editing activity
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004832 IEA valine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0006418 IEA:TAS tRNA aminoacylation for protein translation
GO:0006438 IEA valyl-tRNA aminoacylation
GO:0006450 IEA regulation of translational fidelity
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056717 vars2 valyl-tRNA synthetase 2, mitochondrial (putative) protein_coding Danio_rerio
ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial (putative) protein_coding Mus_musculus

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