C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valyl-tRNA synthetase 2, mitochondrial (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165787 Vars2-003 ENSMUSG00000038838 10090 - 17:35655655-35666263 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLungOvaryPlacentaENSMUST00000165787
Transcript ID Brain Breast Lung Ovary Placenta
ENSMUST00000165787 1.920±0.66 1.473±0.00 3.049±0.52 1.804±0.21 1.203±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321897 VARS2-001 protein_coding Homo_sapiens 0 2590
ENST00000383369 VARSL-001 protein_coding Homo_sapiens 0 2601
ENST00000383540 VARS2-001 protein_coding Homo_sapiens 0 2584
ENST00000411697 VARS2-006 protein_coding Homo_sapiens 1.00053e-42 178
ENST00000415079 VARS2-001 protein_coding Homo_sapiens 0 2590
ENST00000425563 VARSL-006 protein_coding Homo_sapiens 1.00053e-42 178
ENST00000428017 VARS2-006 protein_coding Homo_sapiens 1.00053e-42 178
ENST00000428577 VARSL-001 protein_coding Homo_sapiens 0 2595
ENST00000431578 VARSL-006 protein_coding Homo_sapiens 1.00053e-42 178
ENST00000446577 VARS2-006 protein_coding Homo_sapiens 1.00053e-42 178
ENST00000450090 VARS2-001 protein_coding Homo_sapiens 0 2584
ENST00000452966 VARS2-006 protein_coding Homo_sapiens 1.00053e-42 178
ENST00000462127 VARSL-003 retained_intron Homo_sapiens 0 1051
ENST00000462413 VARS2-007 processed_transcript Homo_sapiens 8.99634e-43 178
ENST00000462424 VARS2-005 retained_intron Homo_sapiens 0 525
ENST00000462755 VARSL-005 retained_intron Homo_sapiens 0 542
ENST00000462929 VARS2-004 processed_transcript Homo_sapiens 0 1195
ENST00000463160 VARSL-010 processed_transcript Homo_sapiens 0 839
ENST00000463673 VARS2-010 processed_transcript Homo_sapiens 0 839
ENST00000464084 VARSL-002 retained_intron Homo_sapiens 0 2492
ENST00000464843 VARSL-003 retained_intron Homo_sapiens 0 1040
ENST00000467717 VARS2-007 processed_transcript Homo_sapiens 8.99634e-43 178
ENST00000469311 VARS2-002 retained_intron Homo_sapiens 0 2486
ENST00000469358 VARS2-003 retained_intron Homo_sapiens 0 1040
ENST00000469489 VARSL-002 retained_intron Homo_sapiens 0 2497
ENST00000469818 VARS2-005 retained_intron Homo_sapiens 0 525
ENST00000470805 VARSL-007 processed_transcript Homo_sapiens 8.99634e-43 178
ENST00000473449 VARS2-003 retained_intron Homo_sapiens 0 1029
ENST00000473916 VARS2-005 retained_intron Homo_sapiens 0 531
ENST00000475174 VARS2-004 processed_transcript Homo_sapiens 0 1184
ENST00000475673 VARS2-002 retained_intron Homo_sapiens 0 2481
ENST00000476017 VARSL-007 processed_transcript Homo_sapiens 8.99634e-43 178
ENST00000476162 VARS2-004 processed_transcript Homo_sapiens 0 1195
ENST00000476604 VARSL-010 processed_transcript Homo_sapiens 0 839
ENST00000477288 VARS2-002 retained_intron Homo_sapiens 0 2486
ENST00000480082 VARS2-005 retained_intron Homo_sapiens 0 531
ENST00000481398 VARS2-010 processed_transcript Homo_sapiens 0 828
ENST00000482947 VARSL-004 processed_transcript Homo_sapiens 0 1195
ENST00000484947 VARS2-007 processed_transcript Homo_sapiens 8.99634e-43 178
ENST00000486378 VARS2-003 retained_intron Homo_sapiens 0 1040
ENST00000489340 VARS2-004 processed_transcript Homo_sapiens 0 1184
ENST00000492221 VARSL-004 processed_transcript Homo_sapiens 0 1206
ENST00000493326 VARS2-002 retained_intron Homo_sapiens 0 2481
ENST00000493915 VARS2-010 processed_transcript Homo_sapiens 0 828
ENST00000494657 VARS2-007 processed_transcript Homo_sapiens 8.99634e-43 178
ENST00000495393 VARS2-003 retained_intron Homo_sapiens 0 1029
ENST00000498621 VARSL-005 retained_intron Homo_sapiens 0 531
ENST00000541562 VARS2-201 protein_coding Homo_sapiens 0 2590
ENST00000542001 VARS2-202 protein_coding Homo_sapiens 0 2556
ENST00000546854 VARS2-203 protein_coding Homo_sapiens 0 2590
ENST00000547340 VARS2-203 protein_coding Homo_sapiens 0 2551
ENST00000548165 VARSL-202 protein_coding Homo_sapiens 0 2595
ENST00000548842 VARSL-201 protein_coding Homo_sapiens 0 2562
ENST00000549458 VARS2-204 protein_coding Homo_sapiens 0 2584
ENST00000549900 VARSL-204 protein_coding Homo_sapiens 0 2567
ENST00000550773 VARS2-201 protein_coding Homo_sapiens 0 2551
ENST00000551709 VARS2-204 protein_coding Homo_sapiens 0 2556
ENST00000552560 VARS2-202 protein_coding Homo_sapiens 0 2584
ENST00000553245 VARSL-203 protein_coding Homo_sapiens 0 2601

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