C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428680 CNOT4-002 ENSG00000080802 9606 - 7:135386151-135510076 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000428680
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000428680 0.979±0.00 0.675±0.00 0.926±0.00 1.069±0.08 1.514±0.78 1.472±0.43 0.604±0.26 0.956±0.00 3.431±0.00 1.887±1.40 2.644±0.75 1.532±0.65 0.746±0.36 1.689±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002H2 CIL_0002H2_0001 CGP 7:135361795-135648757

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 IEA nucleic acid binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016874 IEA ligase activity
GO:0030014 IDA CCR4-NOT complex
GO:0044822 IDA poly(A) RNA binding
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044163 Cnot4-201 protein_coding Mus_musculus 0 4058
ENSMUST00000114993 Cnot4-203 protein_coding Mus_musculus 0 2880
ENSMUST00000114989 Cnot4-202 protein_coding Mus_musculus 0 2844
ENSDART00000022646 CNOT4 (2 of 2)-001 protein_coding Danio_rerio 6e-31 141

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