C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 1, regulatory subunit 9A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000433360 PPP1R9A-003 ENSG00000158528 9606 + 7:94907637-95291265 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyPlacentaENST00000433360
Transcript ID Bladder Breast Colon Heart Kidney Placenta
ENST00000433360 0.335±0.00 0.465±0.00 0.597±0.00 0.946±0.36 0.123±0.00 0.188±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053J CIL_00053J_0001 CGP 7:94656325-95296415
CIL_00053I CIL_00053I_0001 CGP 7:94907202-95324707

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005739 IEA mitochondrion
GO:0005856 IEA cytoskeleton
GO:0006915 IEA apoptotic process
GO:0006919 IEA activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0007015 IEA actin filament organization
GO:0019722 IEA calcium-mediated signaling
GO:0030054 IEA cell junction
GO:0030175 IEA filopodium
GO:0030426 IEA growth cone
GO:0030864 IEA cortical actin cytoskeleton
GO:0031175 IEA neuron projection development
GO:0043197 IEA dendritic spine
GO:0045202 IEA synapse
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176263 Ppp1r9a-006 nonsense_mediated_decay Mus_musculus 0 4425
ENSMUST00000175889 Ppp1r9a-002 protein_coding Mus_musculus 0 2281
ENSMUST00000168998 Ppp1r9a-003 protein_coding Mus_musculus 0 2270
ENSMUST00000164110 Ppp1r9a-007 retained_intron Mus_musculus 0 2183
ENSMUST00000035813 Ppp1r9a-001 protein_coding Mus_musculus 0 2183
ENSMUST00000177456 Ppp1r9a-010 protein_coding Mus_musculus 0 2061
ENSMUST00000177153 Ppp1r9a-009 nonsense_mediated_decay Mus_musculus 0 2061
ENSMUST00000175962 Ppp1r9a-004 protein_coding Mus_musculus 0 1613
ENSMUST00000177338 Ppp1r9a-005 protein_coding Mus_musculus 0 1519
ENSMUST00000176729 Ppp1r9a-008 nonsense_mediated_decay Mus_musculus 0 963
ENSMUST00000176136 Ppp1r9a-011 processed_transcript Mus_musculus 0 315

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