C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436367 ATXN1-201 ENSG00000124788 9606 - 6:16299112-16761490 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000436367
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000436367 2.650±0.00 1.494±0.00 0.930±0.00 3.728±1.50 3.742±0.65 3.139±0.38 3.559±0.00 1.065±0.10 3.248±2.26 2.870±0.00 3.829±0.00 2.564±0.24 1.129±0.71 2.216±1.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RQ CIL_0003RQ_0001 CGP 6:16238580-16761491

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006396 NAS RNA processing
GO:0008022 IPI protein C-terminus binding
GO:0008219 IEA cell death
GO:0008266 IDA poly(U) RNA binding
GO:0016363 IDA nuclear matrix
GO:0034046 IDA poly(G) binding
GO:0042272 IDA nuclear RNA export factor complex
GO:0042405 IDA nuclear inclusion body
GO:0042802 IPI identical protein binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043621 IDA protein self-association
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0051168 IDA nuclear export

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167708 Atxn1-202 protein_coding Mus_musculus 0 2102
ENSMUST00000091628 Atxn1-201 protein_coding Mus_musculus 0 2102
ENSMUST00000180110 Atxn1-203 protein_coding Mus_musculus 0 2002

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