C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000437508 TRIM2-004 ENSG00000109654 9606 + 4:153153118-153336362 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungOvaryENST00000437508
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Ovary
ENST00000437508 6.440±0.00 16.714±0.00 2.144±0.00 6.755±0.00 1.289±0.00 3.473±0.00 2.893±0.00 5.002±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0008219 IEA cell death
GO:0008270 IEA:NAS zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0043523 ISS regulation of neuron apoptotic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107692 Trim2-001 protein_coding Mus_musculus 0 3834
ENSMUST00000107693 Trim2-201 protein_coding Mus_musculus 0 3825
ENSMUST00000054990 Trim2-002 protein_coding Mus_musculus 0 3825
ENSMUST00000065380 Trim2-005 protein_coding Mus_musculus 0 3825
ENSMUST00000107695 Trim2-004 protein_coding Mus_musculus 0 3825
ENSMUST00000107691 Trim2-003 protein_coding Mus_musculus 0 3825
ENSMUST00000128574 Trim2-010 retained_intron Mus_musculus 0 2734
ENSMUST00000137596 Trim2-008 retained_intron Mus_musculus 0 1975
ENSMUST00000122849 Trim2-012 protein_coding Mus_musculus 0 922
ENSMUST00000132283 Trim2-011 protein_coding Mus_musculus 0 902
ENSMUST00000156347 Trim2-016 processed_transcript Mus_musculus 0 719
ENSMUST00000147901 Trim2-014 protein_coding Mus_musculus 0 610
ENSMUST00000136651 Trim2-009 retained_intron Mus_musculus 0 592
ENSDART00000113551 trim2b-001 protein_coding Danio_rerio 0 551
ENSMUST00000154152 Trim2-015 protein_coding Mus_musculus 0 324
ENSMUST00000140856 Trim2-007 retained_intron Mus_musculus 0 316

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