C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MCF.2 cell line derived transforming sequence
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000437564 MCF2-006 ENSG00000101977 9606 - X:139581771-139605779 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000437564
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000437564 0.117±0.00 1.669±0.00 0.069±0.00 0.079±0.00 0.042±0.00 0.433±0.00 0.017±0.00 0.481±0.32 0.034±0.00 3.506±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PO CIL_0000PO_0002 CGP X:139530758-139708227
CIL_0000PN CIL_0000PN_0002 CGP X:139581770-139945276

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101531 Mcf2-003 protein_coding Mus_musculus 0 985
ENSMUST00000033478 Mcf2-002 protein_coding Mus_musculus 0 985
ENSMUST00000063507 Mcf2-001 protein_coding Mus_musculus 0 985

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