C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon regulatory factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000437654 IRF1-002 ENSG00000125347 9606 - 5:132485667-132490777 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleENST00000437654
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle
ENST00000437654 6.718±0.00 3.665±0.00 1.251±0.00 3.294±0.00 8.509±0.00 5.366±0.00 3.640±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093D CIL_00093D_0001 VISTA 5:131965137-132566411
CIL_0007RF CIL_0007RF_0001 VISTA 5:131967147-132570227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000975 IEA regulatory region DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140866 Irf1-010 protein_coding Mus_musculus 0 715
ENSMUST00000108922 Irf1-008 protein_coding Mus_musculus 0 680
ENSMUST00000108920 Irf1-001 protein_coding Mus_musculus 0 680
ENSMUST00000019043 Irf1-002 protein_coding Mus_musculus 0 651
ENSMUST00000123376 Irf1-005 protein_coding Mus_musculus 0 647
ENSMUST00000133291 Irf1-006 protein_coding Mus_musculus 0 564
ENSMUST00000138913 Irf1-007 protein_coding Mus_musculus 0 285
ENSMUST00000142221 Irf1-009 nonsense_mediated_decay Mus_musculus 2e-39 167
ENSMUST00000170390 Gm17334-201 protein_coding Mus_musculus 1e-35 154

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