C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon regulatory factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142221 Irf1-009 ENSMUSG00000018899 10090 + 11:53770105-53774085 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENSMUST00000142221
Transcript ID Ovary Placenta Testis
ENSMUST00000142221 20.093±0.00 2.313±0.00 0.894±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RF CIL_0007RF_0002 VISTA 11:53756663-54359415
CIL_00093D CIL_00093D_0002 VISTA 11:53760072-54361368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000975 IEA regulatory region DNA binding
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0010468 IMP regulation of gene expression
GO:0043374 IMP CD8-positive, alpha-beta T cell differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0045084 IDA positive regulation of interleukin-12 biosynthetic process
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245414 IRF1-001 protein_coding Homo_sapiens 8e-39 167
ENST00000405885 IRF1-008 protein_coding Homo_sapiens 4e-30 137
ENST00000437654 IRF1-002 protein_coding Homo_sapiens 2e-39 167
ENST00000439555 IRF1-009 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000458069 IRF1-010 protein_coding Homo_sapiens 5e-30 135
ENST00000459982 IRF1-004 retained_intron Homo_sapiens 1e-38 165
ENST00000476613 IRF1-007 protein_coding Homo_sapiens 9e-31 137
ENST00000493208 IRF1-005 retained_intron Homo_sapiens 2e-39 167
ENST00000613424 IRF1-201 protein_coding Homo_sapiens 2e-39 167

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