C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439029 SMPD4-019 ENSG00000136699 9606 - 2:130157361-130181596 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0050290 IEA sphingomyelin phosphodiesterase D activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170117 Smpd4-012 nonsense_mediated_decay Mus_musculus 0 451
ENSMUST00000006053 Smpd4-001 protein_coding Mus_musculus 0 451
ENSMUST00000163592 Smpd4-015 protein_coding Mus_musculus 5.99756e-43 178
ENSMUST00000166091 Smpd4-005 retained_intron Mus_musculus 5.99756e-43 178
ENSMUST00000172182 Smpd4-021 protein_coding Mus_musculus 5.99756e-43 178
ENSMUST00000167217 Smpd4-010 nonsense_mediated_decay Mus_musculus 5.99756e-43 178
ENSMUST00000170401 Smpd4-006 retained_intron Mus_musculus 5.99756e-43 178
ENSMUST00000090159 Smpd4-004 protein_coding Mus_musculus 5.99756e-43 178
ENSMUST00000169662 Smpd4-018 protein_coding Mus_musculus 5.99756e-43 178
ENSMUST00000165363 Smpd4-003 protein_coding Mus_musculus 5.99756e-43 178
ENSMUST00000163476 Smpd4-002 protein_coding Mus_musculus 5.99756e-43 178
ENSMUST00000171435 Smpd4-019 protein_coding Mus_musculus 6.99949e-42 174
ENSMUST00000170366 Smpd4-009 protein_coding Mus_musculus 4e-39 165
ENSMUST00000170273 Smpd4-014 protein_coding Mus_musculus 2e-38 163
ENSMUST00000163997 Smpd4-011 protein_coding Mus_musculus 2e-38 163
ENSMUST00000165092 Smpd4-016 protein_coding Mus_musculus 6e-28 128
ENSMUST00000167362 Smpd4-013 processed_transcript Mus_musculus 6e-28 128
ENSMUST00000166322 Smpd4-023 retained_intron Mus_musculus 2e-27 126

Loading