C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin phosphodiesterase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170401 Smpd4-006 ENSMUSG00000005899 10090 + 16:17619363-17644827 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverLungOvaryPlacentaENSMUST00000170401
Transcript ID Adipose Bladder Brain Breast Liver Lung Ovary Placenta
ENSMUST00000170401 3.140±0.00 1.396±0.00 5.933±0.18 1.991±0.34 2.581±1.42 2.256±0.17 3.081±1.39 1.451±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086B CIL_00086B_0002 VISTA 16:17508169-18111091
CIL_0004H9 CIL_0004H9_0002 CGP 16:17619354-17650738

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017937 smpd4-201 protein_coding Danio_rerio 0 316
ENSDART00000130519 smpd4-001 protein_coding Danio_rerio 0 316
ENSDART00000144131 smpd4-004 retained_intron Danio_rerio 0 215
ENSDART00000147567 smpd4-003 protein_coding Danio_rerio 0 215
ENSDART00000133396 smpd4-005 retained_intron Danio_rerio 2e-36 159
ENST00000351288 SMPD4-002 protein_coding Homo_sapiens 0 2028
ENST00000409031 SMPD4-001 protein_coding Homo_sapiens 0 1447
ENST00000412570 SMPD4-013 nonsense_mediated_decay Homo_sapiens 0 2028
ENST00000415574 AC093838.4-003 transcribed_processed_pseudogene Homo_sapiens 0 1932
ENST00000430682 SMPD4-015 protein_coding Homo_sapiens 0 490
ENST00000431183 SMPD4-201 protein_coding Homo_sapiens 0 2032
ENST00000433118 SMPD4-012 nonsense_mediated_decay Homo_sapiens 0 1447
ENST00000435455 SMPD4-010 nonsense_mediated_decay Homo_sapiens 0 652
ENST00000438378 AC093838.4-001 processed_transcript Homo_sapiens 0 1559
ENST00000439029 SMPD4-019 nonsense_mediated_decay Homo_sapiens 5.99756e-43 178
ENST00000439886 SMPD4-004 protein_coding Homo_sapiens 0 1266
ENST00000441135 SMPD4-020 protein_coding Homo_sapiens 0 322
ENST00000449159 SMPD4-009 protein_coding Homo_sapiens 0 322
ENST00000451542 SMPD4-016 protein_coding Homo_sapiens 0 874
ENST00000454468 SMPD4-011 nonsense_mediated_decay Homo_sapiens 0 1447
ENST00000455548 SMPD4-018 processed_transcript Homo_sapiens 0 364
ENST00000457039 SMPD4-014 protein_coding Homo_sapiens 0 789
ENST00000461187 SMPD4-008 retained_intron Homo_sapiens 0 494
ENST00000473720 SMPD4-017 processed_transcript Homo_sapiens 0 276
ENST00000482171 SMPD4-005 retained_intron Homo_sapiens 0 863
ENST00000491128 SMPD4-006 retained_intron Homo_sapiens 0 1188
ENST00000491319 SMPD4-007 retained_intron Homo_sapiens 0 366

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