C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin phosphodiesterase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167217 Smpd4-010 ENSMUSG00000005899 10090 + 16:17619374-17638525 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverENSMUST00000167217
Transcript ID Breast Liver
ENSMUST00000167217 7.875±0.00 3.023±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086B CIL_00086B_0002 VISTA 16:17508169-18111091
CIL_0004H9 CIL_0004H9_0002 CGP 16:17619354-17650738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0050290 IEA sphingomyelin phosphodiesterase D activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351288 SMPD4-002 protein_coding Homo_sapiens 0 623
ENST00000409031 SMPD4-001 protein_coding Homo_sapiens 0 584
ENST00000412570 SMPD4-013 nonsense_mediated_decay Homo_sapiens 0 623
ENST00000415574 AC093838.4-003 transcribed_processed_pseudogene Homo_sapiens 0 599
ENST00000430682 SMPD4-015 protein_coding Homo_sapiens 0 440
ENST00000431183 SMPD4-201 protein_coding Homo_sapiens 0 628
ENST00000433118 SMPD4-012 nonsense_mediated_decay Homo_sapiens 3.00018e-42 178
ENST00000435455 SMPD4-010 nonsense_mediated_decay Homo_sapiens 0 510
ENST00000438378 AC093838.4-001 processed_transcript Homo_sapiens 0 599
ENST00000439029 SMPD4-019 nonsense_mediated_decay Homo_sapiens 5.99756e-43 178
ENST00000441135 SMPD4-020 protein_coding Homo_sapiens 0 322
ENST00000451542 SMPD4-016 protein_coding Homo_sapiens 0 429
ENST00000454468 SMPD4-011 nonsense_mediated_decay Homo_sapiens 0 584
ENST00000473720 SMPD4-017 processed_transcript Homo_sapiens 0 276

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