C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin phosphodiesterase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006053 Smpd4-001 ENSMUSG00000005899 10090 + 16:17619354-17644828 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000006053
Transcript ID Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000006053 4.286±0.00 2.857±0.00 1.306±0.12 1.146±0.00 3.336±1.25 1.973±0.00 1.342±0.21 2.214±0.00 2.020±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086B CIL_00086B_0002 VISTA 16:17508169-18111091
CIL_0004H9 CIL_0004H9_0002 CGP 16:17619354-17650738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004767 IEA sphingomyelin phosphodiesterase activity
GO:0005783 ISS endoplasmic reticulum
GO:0005794 ISS Golgi apparatus
GO:0005802 ISS trans-Golgi network
GO:0006685 ISS sphingomyelin catabolic process
GO:0016021 IEA integral component of membrane
GO:0046475 IEA glycerophospholipid catabolic process
GO:0046513 IEA ceramide biosynthetic process
GO:0046872 IEA metal ion binding
GO:0050290 IEA:ISS sphingomyelin phosphodiesterase D activity
GO:0071356 IEA cellular response to tumor necrosis factor

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000147567 smpd4-003 protein_coding Danio_rerio 0 326
ENSDART00000144131 smpd4-004 retained_intron Danio_rerio 0 233
ENSDART00000017937 smpd4-201 protein_coding Danio_rerio 0 209
ENSDART00000130519 smpd4-001 protein_coding Danio_rerio 0 209
ENSDART00000133396 smpd4-005 retained_intron Danio_rerio 2e-35 156
ENST00000351288 SMPD4-002 protein_coding Homo_sapiens 0 1447
ENST00000409031 SMPD4-001 protein_coding Homo_sapiens 0 2573
ENST00000412570 SMPD4-013 nonsense_mediated_decay Homo_sapiens 0 1447
ENST00000415574 AC093838.4-003 transcribed_processed_pseudogene Homo_sapiens 0 1376
ENST00000430682 SMPD4-015 protein_coding Homo_sapiens 0 490
ENST00000431183 SMPD4-201 protein_coding Homo_sapiens 0 1447
ENST00000433118 SMPD4-012 nonsense_mediated_decay Homo_sapiens 0 1443
ENST00000435455 SMPD4-010 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000438378 AC093838.4-001 processed_transcript Homo_sapiens 0 1003
ENST00000439029 SMPD4-019 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000439886 SMPD4-004 protein_coding Homo_sapiens 0 1266
ENST00000441135 SMPD4-020 protein_coding Homo_sapiens 0 483
ENST00000449159 SMPD4-009 protein_coding Homo_sapiens 0 322
ENST00000451542 SMPD4-016 protein_coding Homo_sapiens 0 486
ENST00000454468 SMPD4-011 nonsense_mediated_decay Homo_sapiens 0 2263
ENST00000455548 SMPD4-018 processed_transcript Homo_sapiens 0 363
ENST00000457039 SMPD4-014 protein_coding Homo_sapiens 0 789
ENST00000461187 SMPD4-008 retained_intron Homo_sapiens 0 494
ENST00000473720 SMPD4-017 processed_transcript Homo_sapiens 0 195
ENST00000482171 SMPD4-005 retained_intron Homo_sapiens 0 863
ENST00000491128 SMPD4-006 retained_intron Homo_sapiens 0 1188
ENST00000491319 SMPD4-007 retained_intron Homo_sapiens 0 366

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