C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440950 AC092568.1-001 ENSG00000236596 9606 + 2:103494241-103495842 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastTestisENST00000440950
Transcript ID Breast Testis
ENST00000440950 0.055±0.00 0.034±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IW CIL_0004IW_0002 CGP 2:102736908-104860471
CIL_0007JQ CIL_0007JQ_0001 UCNEbase 2:102922366-105081592
CIL_0008WX CIL_0008WX_0001 VISTA 2:102992900-103594763
CIL_0008L1 CIL_0008L1_0001 VISTA 2:103100188-103703366
CIL_0008GO CIL_0008GO_0001 VISTA 2:103144276-103746103
CIL_0008A6 CIL_0008A6_0001 VISTA 2:103147140-103749354
CIL_0008I0 CIL_0008I0_0001 VISTA 2:103369000-103970334
CIL_00099T CIL_00099T_0001 VISTA 2:103437475-104040884

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061283 Crlf3-001 protein_coding Mus_musculus 0 870
ENSMUST00000092858 Crlf3-003 processed_transcript Mus_musculus 0 821
ENSMUST00000103233 Crlf3-002 protein_coding Mus_musculus 0 821
ENSMUST00000179855 Crlf3-008 nonsense_mediated_decay Mus_musculus 0 396
ENSMUST00000177825 Crlf3-006 nonsense_mediated_decay Mus_musculus 0 366
ENSMUST00000178280 Crlf3-005 retained_intron Mus_musculus 0 283

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