C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA-yW synthesizing protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441832 TYW5-003 ENSG00000162971 9606 - 2:199931899-199955503 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLungOvaryPlacentaTestisENST00000441832
Transcript ID Colon Lung Ovary Placenta Testis
ENST00000441832 1.750±0.00 1.672±0.00 2.705±0.83 0.833±0.00 2.159±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002K2 CIL_0002K2_0001 CGP 2:199911256-199955935
CIL_0000JI CIL_0000JI_0002 CGP 2:199929975-200008540

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0031591 IEA wybutosine biosynthetic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161780 Tyw5-003 protein_coding Mus_musculus 0 542
ENSMUST00000079998 Tyw5-004 nonsense_mediated_decay Mus_musculus 0 542
ENSMUST00000162686 Tyw5-001 protein_coding Mus_musculus 0 453
ENSMUST00000161727 Tyw5-010 retained_intron Mus_musculus 0 440
ENSMUST00000162663 Tyw5-011 processed_transcript Mus_musculus 0 440
ENSMUST00000097732 Tyw5-002 retained_intron Mus_musculus 0 440
ENSMUST00000160837 Tyw5-007 protein_coding Mus_musculus 0 420
ENSMUST00000163039 Tyw5-009 processed_transcript Mus_musculus 0 416
ENSMUST00000160118 Tyw5-006 nonsense_mediated_decay Mus_musculus 0 392
ENSMUST00000161092 Tyw5-008 retained_intron Mus_musculus 0 204

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