C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000443146 AC004920.2-001 ENSG00000228085 9606 - 7:50843578-50843732 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartENST00000443146
Transcript ID Heart
ENST00000443146 0.190±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KL CIL_0008KL_0001 VISTA 7:50358274-50958701
CIL_00072I CIL_00072I_0002 CGP 7:50590063-51316818

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 0 191
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 0 191
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 1e-39 165
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 5e-38 159
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 2e-36 154
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 2e-36 154
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 2e-36 154
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 8e-36 152
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 1e-34 148
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 4e-34 147
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 1e-33 145
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 1e-23 111

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