C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: host cell factor C1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000444191 HCFC1-004 ENSG00000172534 9606 - X:153947557-153954121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000444191
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000444191 6.363±0.00 12.425±0.00 3.639±0.00 7.168±0.00 7.291±0.00 3.222±0.00 9.553±0.00 5.527±0.00 6.256±0.00 5.113±0.00 11.450±1.34 4.300±0.57 7.873±2.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LC CIL_0001LC_0001 CGP X:153935263-153971807

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000128136 Hcfc1-002 protein_coding Mus_musculus 0 2200
ENSMUST00000033761 Hcfc1-001 protein_coding Mus_musculus 0 2182
ENSMUST00000114372 Hcfc1-005 protein_coding Mus_musculus 0 2013
ENSMUST00000131091 Hcfc1-006 processed_transcript Mus_musculus 0 828
ENSMUST00000156204 Hcfc1-007 retained_intron Mus_musculus 0 538
ENSDART00000019533 hcfc1b-201 protein_coding Danio_rerio 0 392
ENSDART00000132536 hcfc1b-001 protein_coding Danio_rerio 0 392
ENSDART00000138323 hcfc1b-002 retained_intron Danio_rerio 0 381

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