C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000445194 RP5-854E16.2-001 ENSG00000224628 9606 - 20:31285317-31286835 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungOvaryTestisENST00000445194
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Ovary Testis
ENST00000445194 0.022±0.00 0.012±0.00 0.013±0.00 0.013±0.00 0.011±0.00 0.012±0.00 0.011±0.00 0.071±0.06 0.038±0.00 0.022±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001A5 CIL_0001A5_0001 CGP 20:31257664-31308585

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103152 Cdk5rap3-001 protein_coding Mus_musculus 0 1555
ENSMUST00000134732 Cdk5rap3-010 nonsense_mediated_decay Mus_musculus 0 1171
ENSMUST00000127048 Cdk5rap3-002 protein_coding Mus_musculus 0 721
ENSMUST00000156315 Cdk5rap3-005 protein_coding Mus_musculus 0 610
ENSMUST00000144731 Cdk5rap3-003 protein_coding Mus_musculus 0 556
ENSMUST00000147573 Cdk5rap3-011 nonsense_mediated_decay Mus_musculus 0 527
ENSMUST00000149033 Cdk5rap3-008 retained_intron Mus_musculus 0 407
ENSMUST00000153305 Cdk5rap3-007 nonsense_mediated_decay Mus_musculus 0 385
ENSMUST00000130767 Cdk5rap3-006 retained_intron Mus_musculus 0 383
ENSMUST00000154289 Cdk5rap3-009 retained_intron Mus_musculus 0 318
ENSMUST00000130774 Cdk5rap3-004 protein_coding Mus_musculus 0.000000000000003 88

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