C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: attractin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446916 ATRN-001 ENSG00000088812 9606 + 20:3471108-3615947 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000446916
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000446916 4.866±0.00 2.869±0.00 2.628±0.00 0.742±0.00 2.968±1.03 3.979±0.53 3.048±1.51 1.307±0.00 0.635±0.12 2.634±0.84 9.301±0.34 2.559±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032V CIL_00032V_0001 CGP 20:3249305-3651122
CIL_00067S CIL_00067S_0002 CGP 20:3471040-3663399

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005886 NAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006954 IEA inflammatory response
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane
GO:0030246 IEA carbohydrate binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000134964 Atrn-002 retained_intron Mus_musculus 0 4839
ENSMUST00000028781 Atrn-001 protein_coding Mus_musculus 0 4835
ENSMUST00000151364 Atrn-003 retained_intron Mus_musculus 0 473
ENSMUST00000132557 Atrn-005 retained_intron Mus_musculus 0 411
ENSMUST00000156982 Atrn-004 retained_intron Mus_musculus 0 340

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