C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448759 RP11-342M1.7-001 ENSG00000233708 9606 - 1:42886597-42888767 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainLungOvaryTestisENST00000448759
Transcript ID Adipose Adrenal Brain Lung Ovary Testis
ENST00000448759 0.014±0.00 0.031±0.00 0.077±0.00 0.016±0.00 0.023±0.00 0.707±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0001 VISTA 1:42456139-43057783
CIL_0008N2 CIL_0008N2_0001 VISTA 1:42758169-43359178

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026659 Tmc6-001 protein_coding Mus_musculus 0 475
ENSMUST00000131606 Tmc6-003 nonsense_mediated_decay Mus_musculus 0 475
ENSMUST00000148220 Tmc6-009 retained_intron Mus_musculus 2e-27 128

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