C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane channel-like gene family 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148220 Tmc6-009 ENSMUSG00000025572 10090 - 11:117766060-117769073 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENSMUST00000148220
Transcript ID Brain Muscle Ovary Placenta Testis
ENSMUST00000148220 2.897±0.00 1.571±0.00 20.216±0.00 13.654±0.00 1.615±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_00009V CIL_00009V_0002 CGP 11:117654289-117782198
CIL_0000A9 CIL_0000A9_0002 CGP 11:117765988-117793110

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322914 TMC6-002 protein_coding Homo_sapiens 4e-31 141
ENST00000392467 TMC6-001 protein_coding Homo_sapiens 4e-31 141
ENST00000448759 RP11-342M1.7-001 processed_pseudogene Homo_sapiens 2e-27 128
ENST00000590602 TMC6-007 protein_coding Homo_sapiens 7e-31 141
ENST00000591436 TMC6-009 protein_coding Homo_sapiens 2e-31 141
ENST00000593044 TMC6-004 retained_intron Homo_sapiens 4e-31 141

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