C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane channel-like gene family 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026659 Tmc6-001 ENSMUSG00000025572 10090 - 11:117765988-117780639 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026659
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026659 15.693±5.11 18.279±5.81 21.899±2.59 1.025±0.04 20.376±9.44 46.375±2.36 3.716±1.27 13.044±2.01 14.523±13.15 26.545±3.05 0.875±0.41 15.658±4.97 5.136±1.27 2.466±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_00009V CIL_00009V_0002 CGP 11:117654289-117782198
CIL_0000A9 CIL_0000A9_0002 CGP 11:117765988-117793110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0031965 IEA nuclear membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306591 TMC6-026 protein_coding Homo_sapiens 0 782
ENST00000322914 TMC6-002 protein_coding Homo_sapiens 0 1705
ENST00000392467 TMC6-001 protein_coding Homo_sapiens 0 1705
ENST00000448759 RP11-342M1.7-001 processed_pseudogene Homo_sapiens 0 475
ENST00000585849 TMC6-018 retained_intron Homo_sapiens 0 263
ENST00000586126 TMC6-011 nonsense_mediated_decay Homo_sapiens 0 206
ENST00000586697 TMC6-017 retained_intron Homo_sapiens 0.0000000000006 79
ENST00000588087 TMC6-006 retained_intron Homo_sapiens 0 1118
ENST00000588792 TMC6-005 retained_intron Homo_sapiens 1e-25 121
ENST00000589271 TMC6-015 protein_coding Homo_sapiens 0 516
ENST00000589553 TMC6-003 protein_coding Homo_sapiens 0 586
ENST00000590162 TMC6-013 retained_intron Homo_sapiens 9e-26 121
ENST00000590602 TMC6-007 protein_coding Homo_sapiens 0 1705
ENST00000591436 TMC6-009 protein_coding Homo_sapiens 0 593
ENST00000591594 TMC6-020 retained_intron Homo_sapiens 0 307
ENST00000592063 TMC6-016 protein_coding Homo_sapiens 0 291
ENST00000592076 TMC6-021 processed_transcript Homo_sapiens 5e-29 132
ENST00000592594 TMC6-010 protein_coding Homo_sapiens 0 263
ENST00000593044 TMC6-004 retained_intron Homo_sapiens 0 1600

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