C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calumenin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449187 CALU-002 ENSG00000128595 9606 + 7:128739363-128770576 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000449187
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000449187 13.500±0.00 8.295±0.00 0.834±0.00 4.408±0.00 7.887±0.53 5.918±2.33 4.549±0.00 6.576±0.00 9.032±5.30 5.346±1.56 4.357±0.00 12.121±6.22 43.870±0.00 7.627±1.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FD CIL_0004FD_0001 CGP 7:128709061-128771807
CIL_0005UE CIL_0005UE_0002 CGP 7:128739292-128775790

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0005509 IDA:IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005783 IDA endoplasmic reticulum
GO:0005794 TAS Golgi apparatus
GO:0007596 TAS blood coagulation
GO:0008150 ND biological_process
GO:0016020 IDA membrane
GO:0016529 IEA sarcoplasmic reticulum
GO:0030168 TAS platelet activation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090481 Calu-002 protein_coding Mus_musculus 0 1989
ENSMUST00000031779 Calu-001 protein_coding Mus_musculus 0 1640
ENSMUST00000174096 Calu-005 nonsense_mediated_decay Mus_musculus 0 1134
ENSMUST00000173216 Calu-007 protein_coding Mus_musculus 0 793
ENSMUST00000174280 Calu-006 protein_coding Mus_musculus 0 789
ENSMUST00000172974 Calu-009 protein_coding Mus_musculus 0 658
ENSMUST00000156163 Calu-003 protein_coding Mus_musculus 0 640
ENSMUST00000138523 Calu-004 processed_transcript Mus_musculus 0 580
ENSMUST00000172607 Calu-010 protein_coding Mus_musculus 0 363
ENSMUST00000173694 Calu-008 protein_coding Mus_musculus 0 359

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