C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eomesodermin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449599 EOMES-002 ENSG00000163508 9606 - 3:27716377-27722312 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000449599
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000449599 0.214±0.00 0.061±0.00 0.042±0.00 0.076±0.00 0.117±0.08 0.184±0.09 0.033±0.00 0.077±0.04 0.055±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L2 CIL_0008L2_0001 VISTA 3:27692337-28294260
CIL_0002DZ CIL_0002DZ_0002 CGP 3:27715949-28325142

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001102 ISS RNA polymerase II activating transcription factor binding
GO:0001191 ISS RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription
GO:0001706 ISS endoderm formation
GO:0001707 ISS mesoderm formation
GO:0001714 IEA endodermal cell fate specification
GO:0001824 IEA blastocyst development
GO:0001829 IEA trophectodermal cell differentiation
GO:0002302 IMP CD8-positive, alpha-beta T cell differentiation involved in immune response
GO:0003677 ISS DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007420 IMP brain development
GO:0010002 IEA cardioblast differentiation
GO:0010468 IEA regulation of gene expression
GO:0019827 IEA stem cell maintenance
GO:0021772 IEA olfactory bulb development
GO:0021796 IEA cerebral cortex regionalization
GO:0021895 IEA cerebral cortex neuron differentiation
GO:0030154 IEA cell differentiation
GO:0032609 IEA interferon-gamma production
GO:0035914 IEA skeletal muscle cell differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0045597 IEA positive regulation of cell differentiation
GO:0045664 IEA regulation of neuron differentiation
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050767 IEA regulation of neurogenesis
GO:0060706 ISS cell differentiation involved in embryonic placenta development
GO:0060809 ISS mesodermal to mesenchymal transition involved in gastrulation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035020 Eomes-001 protein_coding Mus_musculus 0 2326
ENSMUST00000111763 Eomes-003 protein_coding Mus_musculus 0 1266
ENSMUST00000150633 Eomes-002 protein_coding Mus_musculus 0 1184

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