C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050625 Sema5b-001 ENSMUSG00000052133 10090 + 16:35541571-35664261 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050625
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050625 0.718±0.21 1.467±0.00 0.085±0.03 8.755±4.01 0.233±0.18 0.172±0.04 0.082±0.02 0.148±0.09 0.164±0.10 0.065±0.05 0.056±0.03 0.708±0.49 0.811±0.48 8.902±3.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008J4 CIL_0008J4_0002 VISTA 16:35298618-35902946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0007399 IEA nervous system development
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000087661 sema5bb-001 protein_coding Danio_rerio 0 315
ENST00000195173 SEMA5B-201 protein_coding Homo_sapiens 0 3295
ENST00000357599 SEMA5B-001 protein_coding Homo_sapiens 0 4482
ENST00000393583 SEMA5B-003 protein_coding Homo_sapiens 0 3888
ENST00000421053 SEMA5B-005 protein_coding Homo_sapiens 0 329
ENST00000451055 SEMA5B-202 protein_coding Homo_sapiens 0 4482
ENST00000451541 SEMA5B-004 protein_coding Homo_sapiens 0 979
ENST00000465147 SEMA5B-006 processed_transcript Homo_sapiens 0 346
ENST00000475244 SEMA5B-002 nonsense_mediated_decay Homo_sapiens 0 3699
ENST00000477001 SEMA5B-007 processed_transcript Homo_sapiens 5.00264e-43 178
ENST00000616742 SEMA5B-203 protein_coding Homo_sapiens 0 4482

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